<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10502

Description Uncharacterized protein
SequenceMPCGDSPEGLNIYYYIGLKTMDGAVFTSDELNYLIYRYMMENGYQHSAFTFASESNLSNSNVDGAIVPRGALISIVQKGLHFTEAEFFSTLASSSNEKYEAWRYERALGSICLFEAVLPDAERLKRLEEKIIEEVGEEAVVKPLNIRITEPERPHSTNSAPSSRASSEGDHHVLEDDLERRDHTEEQLQPSNESQGLNPNFQHPGPAYSPNRLQNGNFSVAGHSGKKAAAAAAHNSRPSATGVNNSNIVQYANGKMLPNSDQVNIDPDLELDRNKMQALTGHNADVFICSWNPKHECFASGSGDSTARLWFPGQDIQNSVQSIVLMHEMQREQGNKNKDVTSLNWSSNGEYLATGCYDGVARIWNRKGELVMSTNAHAGPIFALKWNYGGTKVLSAGVDNCTVVWDPQKNVARPFKFHTQSALDVDWINDETFASCSVDSLIHICHCQSDIPLKTFKGHGNEVNAVKYDRISRLLASCSDDRTLKIWNMDEDSPIFDVTAHDKEIYTIRWSPIGNILASASFDCSVKIWDLQNKVCARQLQKHTESVYTVAFHPEGRLLASGSFDRTINIWDLSTGRVVMTYTGCEMSGGFFEVDWNRTGEKLAASAASGTMLLFDLRFLRSVVRT
Length626
PositionTail
OrganismBursaphelenchus xylophilus (Pinewood nematode worm) (Aphelenchoides xylophilus)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Tylenchomorpha> Aphelenchoidea> Aphelenchoididae> Bursaphelenchus.
Aromaticity0.09
Grand average of hydropathy-0.431
Instability index43.75
Isoelectric point5.48
Molecular weight69653.95
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10502
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     440.02|     105|     122|     319|     439|       1
---------------------------------------------------------------------------
  251-  304 (49.69/22.26)	..........................................................YANGKMLPNS.DQVNI...DPdlelD..RNK.MQALTGHNADVFICSWnPKHECFASGSGD
  334-  439 (183.37/141.87)	GNKNkDVTSLNWSSNGEYLATGCYDGVARIWN.RKGE.LVMSTNA..HAGPIFALKWNYGGTKVLSAGVDNCTV.VWDP....Q..KNV.ARPFKFHTQSALDVDW.INDETFASCSVD
  458-  552 (134.47/78.36)	GHGN.EVNAVKYDRISRLLASCSDDRTLKIWN.MDEDsPIFDVTA..HDKEIYTIRWSPIGNILASASFD.CSVkIWDL....Q..NKVcARQLQKHTESVYTVAF.............
  554-  625 (72.49/38.02)	.............PEGRLLASGSFDRTINIWDlSTGR.VVMTYTGceMSGGFFEVDWNRTGEKLAASAASGTML.LFDL....RflRSV.VR...........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.61|      46|      54|     120|     172|       2
---------------------------------------------------------------------------
  120-  169 (68.47/64.20)	DAERLKRLEEKIiEEVGEEAvvkPLNIRITEPERPHSTN....................SAPSSRASSEG
  177-  242 (73.14/45.81)	DLERRDHTEEQL.QPSNESQ...GLNPNFQHPGPAYSPNrlqngnfsvaghsgkkaaaaAAHNSRPSATG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.57|      16|      20|      12|      27|       3
---------------------------------------------------------------------------
   12-   27 (29.27/18.26)	IYYYIGLKTMDGAVFT
   35-   50 (31.30/19.95)	IYRYMMENGYQHSAFT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10502 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KPLNIRITEPERPHSTNSAPSSRASSEGDHHVLEDDLERRDHTEEQLQPSNESQGLNPNFQHPGPAYSPNRLQNGNFSVAGHSGKKAAAAAAHNSRPSATGVNNSNIVQYANGKMLPNSDQVNIDPDLELDRNKM
142
276










Molecular Recognition Features






MoRF SequenceStartStop




NANANA