<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10500

Description Uncharacterized protein
SequenceMPVNNNANAEGGNNNREAKVDELPIGTILAGKFKLTELVLSHPALGLTYNAINREGDGFVVKVDSEKNLLSLVRSEAGFLQAVLQINACDFFVQFMHGAKYQRIIYFVTRFRPGPTLNQCLGAMPAGKFSVGTAVRVAYHISKAINFVHTLNYLLRRMDPNVIRFDVHTKSIYLSDLSSVRVDPVKIKLDAPVRWAGAQLYAPMQHHNGGPIGARHDIEALVFLLVDMTTAKLPWEGCPLDMMGSVKRQSITDQTLFAECPSQYSALYTYISCLTDDNIDYEQIWKKMEETWKQAGVTNFKLDSRNSAHIPSLGTFSLNQNPNEQLQREETAEEAQRRFEVECEFIQSLANPHYVTYLAQRGYFKEQYFLNYLKYLLYWKRPEYAKCLKFPQALSMLENLQNADFREAMVVSTNAKFIEDQLLLQWHYYLRRRAKILQNSHVAEDQQPSSNERPEDETVDDGRAEKENDENDERRIQDQ
Length479
PositionMiddle
OrganismBursaphelenchus xylophilus (Pinewood nematode worm) (Aphelenchoides xylophilus)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Tylenchomorpha> Aphelenchoidea> Aphelenchoididae> Bursaphelenchus.
Aromaticity0.10
Grand average of hydropathy-0.444
Instability index51.75
Isoelectric point6.00
Molecular weight54942.65
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10500
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.10|      19|      22|     336|     357|       2
---------------------------------------------------------------------------
  336-  357 (30.43/23.79)	QRRFEVECEFIQSLanpHYVTY
  360-  378 (35.67/19.49)	QRGYFKEQYFLNYL...KYLLY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10500 with Med31 domain of Kingdom Metazoa
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