<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10486

Description Uncharacterized protein
SequenceMVAAEALSIANFDSPMNKMVGLQLQQSQVPKTSPAVLALKAINDALKQKVVSPQNIDPTNSPQILNNEAIQQSIQKAELLKSGLVDALKKDNLAEIRVTIQEIERAQLCKEALEISRIGAVVNGLRKSIADSNPELAKQCRQLIKSWRSNVTEASRPASSCGSSTSGTPGLASPAIRRGLTPRTGKNVTPSGTTLQGVDGQSASGGYAPRGSPQAAQKRRIDPSPPQSAKKAKLSPIPEVSSVVAARQNVQSTEQLVAALGMDNILANFTKRSESPKPVVSSYEPVEKSEPEKKRGRKSKTSVPQAPLRLKIKFGGQPSVSSESADSAIHSATSSSSSPDLSKEERIEDEPMEEEKPAEISAAKSKMSWYDKLVTVEELERRAEAQKQLLTKNLNKTKITELSVLKQGTRDVLVMPYIDLDDQSEQDMFVGLMDLDLLSAN
Length441
PositionUnknown
OrganismBursaphelenchus xylophilus (Pinewood nematode worm) (Aphelenchoides xylophilus)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Tylenchomorpha> Aphelenchoidea> Aphelenchoididae> Bursaphelenchus.
Aromaticity0.02
Grand average of hydropathy-0.512
Instability index72.33
Isoelectric point9.07
Molecular weight47552.47
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10486
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     439.74|     115|     274|      26|     142|       1
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   26-  142 (176.60/100.52)	QSQVPKTSPAVLALKAINDALKQKVVSPQN..ID........PTNSPQILNNEAIQQSIQKAEllKSGLVDALK.KDN.LAEIRVTIQEIE.RAQLCKEAL.......EISRIGAVVNGLRKSIADSNPELAKQCRQ
  205-  299 (123.62/65.03)	GGYAPRGSPQAAQKRRIDPSPPQ...SAKKakLS........PI..PEVSSVVAARQNVQSTE....QLVAALG.MDNiLANFTKRSESPK.PVVSSYEPV.......EKSE.PEKKRG.RKS..............
  301-  426 (139.53/74.32)	.TSVPQ.APLRLKIKFGG....QPSVSSES..ADsaihsatsSSSSPDLSKEERIEDEPMEEE..KPAEISAAKsKMS.WYDKLVTVEELErRAEAQKQLLtknlnktKITELSVLKQGTRDVLVMPYIDLDDQSEQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.48|      17|      35|     150|     166|       2
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  150-  166 (29.59/14.31)	NVTEASRPASSC.GSSTS
  187-  204 (24.90/11.13)	NVTPSGTTLQGVdGQSAS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10486 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SVSSESADSAIHSATSSSSSPDLSKEERIEDEPMEEEKPAEISA
2) VTEASRPASSCGSSTSGTPGLASPAIRRGLTPRTGKNVTPSGTTLQGVDGQSASGGYAPRGSPQAAQKRRIDPSPPQSAKKAKLSPIPEVSSVVAARQNVQSTEQLVAALGMDNILANFTKRSESPKPVVSSYEPVEKSEPEKKRGRKSKTSVPQAPLRLKIKFGGQ
319
151
362
317










Molecular Recognition Features






MoRF SequenceStartStop




1) SVPQAPLRLKIKFG
302
315