<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10485

Description Uncharacterized protein
SequenceMASNQSPPNPSTSKFAVECPPENPIEYIEYNGEEHLVPPPRFADLITKNAEKIQWRQIVGQMTLLDLYDDQDSAEVKEAKKILQTTQAVRDQAREKVEPVAGPWASVAKLMYQSLQEIDVLLDVLRISRTPYLKPEQVASTMPEDLTGEQLNKTKGFHLASRRKAFDEAKKLLEMFKHNNRDINAMNEKSQFFDELKKMRENWRIRKVNELIFGDLGYRLYGPKFQQSEVFDIFWNPKVNNQTGKGSVQIQVPKHLQRRTKLSVSVMADSQENHDLIFAQKDFSYNFDDSSSMVVPWENALEWAQESLICRDIFIQLTKEAVAEKHVCIITDNSLTVCLSDGMLLKFEMHYFPFQDGDMPEVGDPYLNMSMRELFVSDVIKPKYRPQLFVGAPLSTLPEALDLRGAQGLSAEEIKSRYRPPQPLLTRMIRRSDHFILIDRVTEVLNRHMVLREDPSLTWKWLRCTSIFSIISCQLQSRPDSHNRFNFMIQIGSNEVMVLTKENMVIQCFRQMPLLSQAIHTMASSCQLYTTSNFARQYGWQVLHANNNAYGKDGVPAPTLYACNQSCTKRLFAQFFADHRLPKVFLKYEDWPKPNDDPLSDEQMSSEEFLLSFRPVNLNRIPGSSFMKKIEYILTMFRN
Length639
PositionHead
OrganismBursaphelenchus xylophilus (Pinewood nematode worm) (Aphelenchoides xylophilus)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Tylenchomorpha> Aphelenchoidea> Aphelenchoididae> Bursaphelenchus.
Aromaticity0.10
Grand average of hydropathy-0.453
Instability index49.65
Isoelectric point6.53
Molecular weight73988.96
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10485
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     200.64|      64|     254|     114|     183|       1
---------------------------------------------------------------------------
  114-  183 (97.99/71.70)	SLQEIdVLLDVLRISRTPYLKPEQVASTMPE..DLTGEQlnktkGFHLASRRKAFDEAKKLL.EMFKHNNRDI
  370-  436 (102.64/61.09)	SMREL.FVSDVIKPKYRPQLFVGAPLSTLPEalDLRGAQ.....GLSAEEIKSRYRPPQPLLtRMIRRSDHFI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.45|      20|     153|     293|     314|       5
---------------------------------------------------------------------------
  293-  314 (34.73/24.37)	MVVPWENALEWaqESLICRDIF
  449-  468 (39.72/22.14)	MVLREDPSLTW..KWLRCTSIF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10485 with Med17 domain of Kingdom Metazoa
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