<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10482

Description Uncharacterized protein
SequenceMSRQKLVTFEYDQFYDFKVDFYLIERSQHRKHIQELLFNEELWESTVPDLQFVGFRGLLRRPRHLMGKPTTTSWLTKCSQIRSFVAALDSRVQMAKIEEAIKQLGLQSDVHKEEAVGGDVISITDFSKPINFEDAYFQDHIQNVSLRMHRHGIFHMEICIKDHPVETKELKKSEVFRFFAAIHHATIPPNTSYHENLKRHLYDQLTTYGKLYKATRELAAVYELEMKNKINIVFYNYYKLIITYSKDRNLALIASWKINYDQLIANFIQVSTTKDGKVVIADRWNPHVLVSSLLMERLKESDSLPELVNYLVNTERSLSCLYYFSQVHLNSKRATEQIIGIASGPTSINIKNILIPVTEYQIRLVHGSAHIDFYLLNNNKVGIKATQIKSDDEYLKEKGPKLQKLPGFSHFWGQFCMETKLETIVSREVQDYPRDPGNPSSVPPQETEDAALDSHPMSCPPKYDERFEEFVKYAEKQERDDLHKVFIIEPDVFEKAMGVPEDKEKPSLSKRNVKTEPMMPPQVSPFEGYLRAVNYIARLPQTLEAFARSQNPLQALPITDLKHDEWSVTFDLQGVHASTVAYPAWTVKFRVFLCPTKFTVSIKMEFSGPSQANDTDIKVFVKYFESVVVPMDNEYALHAFFCMCRINVSGVFSAFARLMAAQMDPSSQLNYYWIVHLQLVNIRKKGPNESSLPDFVSGIVINKSDVLITIGLRPSKKREKDPFKVIKIAFVYNFDTENIRYQPTGPNDENRPKVEAALHNMAMEPSEPCIIWPSIRRLIERNDLQLD
Length787
PositionTail
OrganismBursaphelenchus xylophilus (Pinewood nematode worm) (Aphelenchoides xylophilus)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Tylenchomorpha> Aphelenchoidea> Aphelenchoididae> Bursaphelenchus.
Aromaticity0.11
Grand average of hydropathy-0.368
Instability index51.76
Isoelectric point6.95
Molecular weight91055.36
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10482
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     176.06|      54|      58|     633|     689|       1
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  636-  689 (97.42/69.49)	ALHAFFCMCRINVSGVFSAFA.R.LMAAQMDPSSQLNYYWIVHLQLVNIRKK..GPNE
  691-  748 (78.65/47.19)	SLPDFVSGIVINKSDVLITIGlRpSKKREKDPFKVIKIAFVYNFDTENIRYQptGPND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     179.37|      49|      82|     397|     446|       2
---------------------------------------------------------------------------
  397-  446 (87.30/71.63)	EKGPkLQKLP..GFSHFWGQFCMETKLETIVSREVQDYPRDPGNPSSVPPQE
  493-  527 (50.80/34.60)	.............FEKAMG..VPEDKEKPSLSK..RNVKTEPMMPPQVSPFE
  549-  583 (41.27/26.71)	SQNP.LQALPitDLKH..DEWSVTFDLQGVHASTVA.YP.............
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10482 with Med14 domain of Kingdom Metazoa
Unable to open file!