<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10466

Description LAFE_0D10946g1_1
SequenceMEVDWRSTLSNQERSKYITELAQILAQISHLNGGDRGNFNLEKLKKTAEQFEKSLYASSSSKDLYLDAMRKRIAAMDAAKKKAIATVQQNAAKAAGQQARQQAAQAAQQQRQGQFPTAAGMNSQMFLNQQAQARQQAVQQFRTGMGNNIPINGAPARPQLTPQQQQLINEMKVAEIPRELLQRIPNLPPGVNTWQQVTELAQQKRLGQKDLQIAKQVYQMHQQLVFKSKLQQATAGNRTGAAQQRVMQQRQPMGQVQQQQQLAQQQQQPQTSQQVPQQRDRSMTQPPQQQQQQQQQQQQQPQQDIPNVLNRLNQIFSPAEQKALYENGKKLIEDLQRSNRLPAILTPQQQAIYIKKYINQMALKKLQAARMSQASGGNAPSQNQAPGANGPYIPVMSQFTSNNSTSNNVSATMAQRRAFSGAANTNTNNTNNIANDNNIGNHSRATSNANPMVPQPTTAPQQSPPKISLPRPTEQDLLVLRRISAEVQKSHLRLSNITNQLNQEQKQSIKNKLQVNRQLFTNVDNFIPTLYMITRNEENVRQLLQIRMLAKEIIEHASRGTFIVPPEVVDKVVFRYQKYYEFIKDQVLRRHQQIIASRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTTAQGSVDPHFNQQRIQGSFQQIQQQMQMRQQQQQMQPSPQLNNGVRLNSDGFPVNVGNLETDATTLGGAGDNVNRAVSGMEFLNSPDFANGQSPQQLALSPAKKAAAARKKLAQKKQVQNTPLAAPSSTQNTPNVGVSQGTTAASRTGTPLVPNLAPSASPLVNRPNWNHHQSPSPRSIPNGATPPADYPYKEDEDNLKKKVVKKNEIISRFKLRQEILAKSPADLFLTTLGDCFGVQEGSYELINKIPEDIVEQVNSNKKKGGKQALRNKEQDNVDVSIKDNKMLFSNKYEPENQNYSINVSDIASVFKDVYGSTDVSSFSFVPTPVAERSKKRKANELDISPNISPASPAIMSDSKKLKLDSPEDLFFSAPTEDTKKAFPMESSEQNIWDWGFWAKS
Length1037
PositionTail
OrganismLachancea fermentati (Zygosaccharomyces fermentati)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Lachancea.
Aromaticity0.05
Grand average of hydropathy-0.924
Instability index63.84
Isoelectric point9.89
Molecular weight116581.26
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10466
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     131.02|      15|      15|     599|     613|       1
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  289-  303 (34.32/ 8.33)	QQQQQQQQQQQQPQQ
  599-  613 (34.32/ 8.33)	QQQQQQQQQQQQQQQ
  614-  627 (32.67/ 7.59)	QQQQQQQQQQQQ.QQ
  628-  642 (29.71/ 6.26)	QQQQQQQQQQTTAQG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.25|      22|      23|     107|     128|       2
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  115-  140 (30.01/ 8.28)	FPTAAGMNSQMFLNqqaqARQQAVQQ
  249-  270 (37.62/12.36)	QRQPMGQVQQQQQL....AQQQQQPQ
  656-  674 (33.62/10.21)	SFQ..QIQQQMQMR.....QQQQQMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.47|      24|      26|     310|     335|       3
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  181-  210 (25.97/ 9.59)	L...QRIPN.LPPgvntwqqvtelAQQKRL...GQK...D
  309-  334 (37.43/22.92)	L...NRLNQIFSP...........AEQKALYenGKKLIED
  335-  360 (37.06/17.05)	LqrsNRLPAILTP............QQQAIY..IKKYINQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.48|      22|     135|      88|     114|       4
---------------------------------------------------------------------------
   88-  111 (32.52/24.23)	Q...............QNAAKAAGQQARQQaaQAAQQQR
  130-  166 (29.96/ 8.71)	QaqarqqavqqfrtgmGNNIPINGAPARPQ..LTPQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.57|      16|     135|     675|     691|       5
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  675-  690 (29.89/19.84)	PSPQLNNGVR....LNSDGF
  707-  726 (22.68/ 7.88)	AGDNVNRAVSgmefLNSPDF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.29|      19|      23|     955|     974|       6
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  955-  974 (28.65/20.25)	DVSSfSFVP.TP.VAERSKKRK
  979-  999 (25.64/12.78)	DISP.NISPaSPaIMSDSKKLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     172.41|      49|     338|     388|     470|       7
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  422-  470 (89.34/57.84)	AANTNTNNTNNIANDNNIGNHSRA........TSNANPMVPQPTTAPQQSPPKISLP
  762-  818 (83.07/25.41)	AAPSSTQNTPNVGVSQGTTAASRTgtplvpnlAPSASPLVNRPNWNHHQSPSPRSIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.78|      13|      23|     371|     383|       8
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  371-  383 (25.18/12.67)	MSQASGGNAPSQN
  396-  408 (23.60/11.41)	MSQFTSNNSTSNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      44.61|      10|      28|     855|     864|       9
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  855-  864 (14.26/ 8.10)	EILAKSPADL
  871-  880 (15.33/ 9.34)	DCFGVQEGSY
  881-  890 (15.03/ 8.99)	ELINKIPEDI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.70|      16|      19|     903|     920|      10
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  903-  918 (26.85/15.57)	KQALRNK.EQDNVDVSI
  922-  938 (24.85/ 7.95)	KMLFSNKyEPENQNYSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.28|      27|      33|     487|     519|      12
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  487-  519 (30.26/32.57)	VQKSHLRLSNITNqlNQEqkqSIKNKLQVnRQL
  523-  549 (47.02/26.63)	VDNFIPTLYMITR..NEE...NVRQLLQI.RML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      52.52|      11|      19|       7|      17|      13
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    7-   17 (18.17/11.14)	STLSNQERSKY
   29-   39 (18.04/11.00)	SHLNGGDRGNF
   46-   56 (16.32/ 9.17)	KTAEQFEKSLY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10466 with Med15 domain of Kingdom Fungi
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