<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10459

Description LAFE_0C09560g1_1
SequenceMFKEGRQQNRLTQCFEDIMRAGAEMLVQQQMKTIQLGSDVATGFTKSQHRSLGEKVHLFHTILDDLDLTLTASTKYLEAVATEAAERKRQKEKEEQQKQQQQQQQQQQQQQQQQQQLQQQQQQQPQLPNEEDKRFSKESQQIDINNSPIDLTVPTPGSLLNESGGIQTATSNSRNPNFSAEFNDLNDLDLSMFGNLDQNDLGLADFNEDQPNVQPNAVTGDASAINNSKPTAIGTNTPNNPSGNTNPESYLTLNDFNDLGIDWNTNDDQGGLDMNDFNI
Length279
PositionTail
OrganismLachancea fermentati (Zygosaccharomyces fermentati)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Lachancea.
Aromaticity0.05
Grand average of hydropathy-1.059
Instability index47.60
Isoelectric point4.36
Molecular weight31327.63
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10459
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.56|      16|      16|      95|     110|       1
---------------------------------------------------------------------------
   95-  110 (30.31/10.85)	EQQKQQQQQQQQQQQQ
  111-  126 (30.26/10.82)	QQQQQQLQQQQQQQPQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     120.68|      24|      38|     143|     166|       2
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  143-  166 (42.46/20.90)	DIN..NSPIDLTVPTPGSLLNES..G..GI
  184-  203 (28.68/12.21)	DLN..D..LDLSM..FGNLDQND..L..GL
  214-  233 (20.64/ 7.14)	QPN..A......VTGDASAINNSkpT..AI
  234-  261 (28.90/12.35)	GTNtpNNPSGNTNPESYLTLNDF..NdlGI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10459 with Med2 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVATEAAERKRQKEKEEQQKQQQQQQQQQQQQQQQQQQLQQQQQQQPQLPNEEDKRFSKESQQIDINNSPIDLTVPTPGSLLNESGGIQTATSNSRNPNFSAEFNDLNDLDLSMFGNLDQNDLGLADFNEDQPNVQPNAVTGDASAINNSKPTAIGTNTPNNPSGNTNPESYLTLNDFNDLGIDWNTNDDQGGLDMNDFNI
79
279










Molecular Recognition Features






MoRF SequenceStartStop




1) LDMNDFNI
2) LTLNDFNDLGIDWNT
272
251
279
265