<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10425

Description LAMI_0F06656g1_1
SequenceMENDWRITLSSQERSKYITDLAQILAQISQINGGDRANFNLEKLKKTAEQFEKSLYASSSSKELYLDSMRKRIAAMDAAKKKAIVSVQQKNASMVAAGQQAQQRQSQFVGNAPMNSQMFFNQQAQVRQQAAQQYRGSGGNTANNGAVNRPQLTPQQQQLINEMKSAEIPQELLQRIPNLPPGTKTWQQVTELAQKKRLSQKDMQIAKQVYQMHQQLVFKSKLQQANANNRSGAQLSNISQQASMAGIQSTQQQPNISGLQPQQSPHLQQQQLQMQQQLQHLQQQQHQQQQQQQQQQQQQHQQHQQHQQHQQHQQQQQQVQQQQQQQQQQQQQQQQQQSQSQSLQQPQQLLPQQQQHDKMPGQQAQASTQEPPNVLSKLNQLFTPAEQKALYENGKKLIEDLQRANRLPAMLTPQQQATYIKKYINQMALKKLHALRMSQLSGSNANLQQQQQQPQSQLPQQPAQQQLQQPQQQQAQQANHQVPGSQGSGIPVMSQFPPNVPNPNASGTTAQRNQQRKTFQNNGTRSNEGGANVSPASMHLRMNSIPGSSSVPPASAKAPPSQPKISLPRPTEQDLLVLRKISAEVQKSHLRLTNITNQLSQDQRQAIKNKLQLSRQLFTNVDNFIPTLYMITRNEENVRQLLQIRMLAKEIIEHASRGVFIVPAEVVDKVILRYQKYYEFIKDQVLRRHQQILAARQQQMQQQPQQQQQQPQIQTQQQPLQQPLMVPPSDSTFNQQRIQGSFQQIQQQMQMRQQMQQQMQQQIQHQMQQKPQGSPHLDSGRLNNEGIQGVNNGYEASAMKVLPNGPDAVGSLGNGSGAGIEFLNSPDLGGANPSPQQVSPAKLAAAGARKKAGKKVGQAASAGQLSSAQNSPNPAAAQGASRTSTPNLMPGAAPLVSKQGWSQNQSPSPKSAPAGVSPLHENPFKEDEDHLRKLMGKRGEVVTRFRLRQEIFDHSPADFFLSSLADCLGLKEDSFDLIDTIPNETVELFNRAAKKKNARGGQRTREVDHSQASIENNKVSFSNKIEPSLLAIPLSDIASVFRDVYGTTDVTSFSFKPTAAGENSRKRKLTDVESSPNISPASSALMSDSKKIKVDSPEDLFVAPPSEGFNKATSLPDHSSTIWNWSFWSN
Length1130
PositionTail
OrganismLachancea mirantina
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Lachancea.
Aromaticity0.04
Grand average of hydropathy-0.936
Instability index69.04
Isoelectric point9.93
Molecular weight126493.06
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10425
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     239.92|      22|      22|     284|     305|       1
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  267-  286 (35.85/ 6.00)	LQQQQLQMQ.QQLQ.H....LQQ.QQH
  287-  309 (44.50/ 9.30)	QQQQQQQQQ.QQQQ.HQQ..HQQhQQH
  310-  332 (42.66/ 8.60)	QQHQQQQQQvQQQQ.QQQ..QQQ.QQQ
  333-  356 (37.77/ 6.74)	QQQQQSQSQ.SLQQ.PQQllPQQ.QQH
  460-  480 (38.85/ 7.15)	QQPAQQQLQ.QPQQ..QQ..AQQ.ANH
  702-  724 (40.29/ 7.70)	QQPQQQQQQ.PQIQtQQQ..PLQ.QPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.23|      12|      15|     735|     749|       3
---------------------------------------------------------------------------
  735-  749 (20.58/12.27)	QQRIQgsfQQIQQQM
  756-  767 (25.65/ 8.52)	QQQMQ...QQIQHQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.35|      26|      61|     482|     511|       4
---------------------------------------------------------------------------
  360-  386 (35.04/ 6.98)	PGQQAQA...STQEPPNVLSKlNQLFTPAE
  483-  511 (41.31/17.94)	PGSQGSGipvMSQFPPNVPNP.NASGTTAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.67|      19|      61|     774|     798|       5
---------------------------------------------------------------------------
  774-  792 (32.17/10.50)	SPHLDSGRLN..NEGIQGVNN
  820-  840 (27.50/17.60)	IEFLNSPDLGgaNPSPQQVSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.30|      13|      15|     525|     539|       6
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  525-  537 (24.16/18.70)	RSN..EGGANVSPAS
  541-  555 (21.14/ 6.95)	RMNsiPGSSSVPPAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.07|      15|      15|     223|     237|       7
---------------------------------------------------------------------------
  122-  136 (22.12/ 6.83)	QQAQVRQQAAQQYRG
  223-  237 (22.96/ 7.43)	QQANANNRSGAQLSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.12|      26|      45|     845|     872|       8
---------------------------------------------------------------------------
  845-  870 (41.78/19.16)	AAGARKKAGKKV..GQAASAGQLSSAQN
  877-  904 (38.34/19.65)	AQGASRTSTPNLmpGAAPLVSKQGWSQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.88|      20|      23|     573|     595|      10
---------------------------------------------------------------------------
  573-  595 (26.81/19.22)	QDllvLRK.ISAEVQKSHLRLTNI
  601-  621 (28.07/13.14)	QD...QRQaIKNKLQLSRQLFTNV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.42|      17|     197|     243|     261|      11
---------------------------------------------------------------------------
  243-  261 (24.37/14.76)	SMAGIQSTQQQPNiSGLqP
  443-  459 (33.05/12.47)	SNANLQQQQQQPQ.SQL.P
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10425 with Med15 domain of Kingdom Fungi
Unable to open file!