<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10410
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MSDGSMNVDKEDVFKLLVNSSERHLTAKQFLNFFNEILNERLEPLPSNGDESENKHQEQSVYTRIADELFRGLETQKSVLIADYVVEVVFVNYNRQLLEELFSRLSNVTNGRLIIHLFNKASAFLHQLSDRLVIEQVSQDMADVILPSLLSRDFDGIDPLFVKPIAKFLMRCLALANKPLKLSSPLVLEHVHSLMSRLSRTDKLLHKKLLGSVTQKLNYHDQGSGIPSVLVNGAATSPATTSPNFAVSPSNYNYKEEGARKSGKSYQAIRMSRYYKNLWLNSKIISWSAGGSDFALKYSSIDSILNSSEMSNNFNSEAVFSDLIETTFTCFAQFVSNKQYHEPNSNYNLLERQWVIFITKQLPLLIMENASQYPGLIQKSIEAVDDKVAKALRSYGSEKENFKERNEDLFDDFPNNSLDIRHDFIKNLIMLKLQPPSLLNDFLREDQVVDIKSLSCDDSVKLKNEQGVREVIDDFSAFITTALRSMDIEGIFETSGTSTIATGDRLIQTFQDFESVAPTKQREAAQTIFQLLCDAVKDFDYRLVAKICCVLTMNWGHSLTSILSFVAPSKFAVPLCEFLEDAWDMRSERVSESLMEDSDLELNSDFVIFTHALLFLITLQETYGIKLTDIFLSSKRLSTQNSFILDFVSHLGQIPDRLELSNGAQENKNLLETWFRDLFINGSISDSLMKSTGVKDLAHLVPFIFKQSVESVEVGALRDVSPLIGGFEYFLQPFMIIGMIGIVFWLEPYLCTVKSKGSSDEFFESLLEMLNSLINPATLNDESRPLHTIILRLNAPKLLKALRAFRSQTQPNYGIYSADAQGHPKLESLISHLEDSLKTGIVYNVDPRLLSNSNGYSQKDVIYAPFIITNETTISSILTNQINSFWNLHSSTYFNLDYLMTLVSIITPGRFLEEVLESLKEKTLATSTQNSKIETHVIESQNCLDLLFYFLVFHDMCLFSNKVYLLQYMESTEDTLSLSLKQSEELKYEPDMKVEQQADEDFDMLFGEDTSTAGNDPELLNQERLERDMMERRVPILLRSSFARILHEKKLATDELRHDTNYKDSLASDVDEYHSRYVRLLDTVVI |
Length | 1086 |
Position | Tail |
Organism | Lachancea mirantina |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Saccharomycetaceae> Lachancea.
|
Aromaticity | 0.09 |
Grand average of hydropathy | -0.187 |
Instability index | 38.74 |
Isoelectric point | 5.02 |
Molecular weight | 123679.16 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP10410
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 194.06| 61| 249| 575| 659| 1
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590- 654 (91.15/73.94) VSESLMEDSDLELNSDfVIFTHallFLITLQETYGIKLTDIFLSSKRLSTQNSFILDFVSHLGQI
845- 905 (102.91/49.00) VDPRLLSNSNGYSQKD.VIYAP...FIITNETTISSILTNQINSFWNLHSSTYFNLDYLMTLVSI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 418.78| 145| 248| 48| 223| 2
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48- 223 (196.96/223.29) NGDESENKHQEQSVYTRIADELFrgletqksVLIADYVVEVVF..VNYNRQLLEELFSRLsnVTNgRLIIHLFNKASAF..LHQLSdrlvIEQVSQDMADVILP......SLLSRDFDgidpLFvkpiAKFLMRCLALANK......PLKLSSPlvlehvhSLMSRLSRTDKLLH.KKLLGSVTQKLNyHDQG
306- 467 (221.82/163.21) NSSEMSNNFNSEAVFSDLIETTF........TCFAQFVSNKQYhePNSNYNLLERQWVIF..ITK.QLPLLIMENASQYpgLIQKS....IEAVDDKVAKALRSygsekeNFKERNED....LF....DDFPNNSLDIRHDfiknliMLKLQPP.......SLLNDFLREDQVVDiKSLSCDDSVKLK.NEQG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 140.78| 44| 184| 536| 585| 4
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536- 585 (66.38/63.80) VKDFDYRL..VAKICCVLTMNWghsLTSILSFVaPSKFAVPlcEFLEDAWDM
724- 769 (74.40/49.31) IGGFEYFLqpFMIIGMIGIVFW...LEPYLCTV.KSKGSSD..EFFESLLEM
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