<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10408

Description LADA_0F06326g1_1
SequenceMNWDGRHHNKLSKCFDDIMTAAAEMMVQQQIKSIQLSSDIAPGFTQSQHKLLGEKVHAFHSVLDDLDLTLTAARNSVDSLAAEALEREQKLREQQRLQEKEDQKMKEQEEERKRLEEARKSSEQAPASGGDYAESTPATFLNEISKTGLAASKSNIKVDASGTTASDNGNSNIGGNAGDNGSGSNGNFSSGFNDLNDLDLSMFGGVEESDIGLGNFDDTQLAPPQDKNPGNQMAYSSTMTPSNGRDPNDMLSDEAGGNPDSYLTLNDFNDLGLDWNTSEGHNGLEMDEFNI
Length291
PositionTail
OrganismLachancea dasiensis CBS 10888
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Lachancea.
Aromaticity0.05
Grand average of hydropathy-0.856
Instability index41.47
Isoelectric point4.39
Molecular weight31587.83
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10408
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.76|      15|      15|     155|     169|       1
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  155-  169 (25.32/12.68)	NIKVDASGTTASDNG
  172-  186 (27.44/14.31)	NIGGNAGDNGSGSNG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.23|      24|      70|     192|     217|       2
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  192-  217 (38.71/25.19)	FNDLNDLDLSMfgGVEESDIGL..GNFD
  265-  290 (41.52/20.92)	LNDFNDLGLDW..NTSEGHNGLemDEFN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.61|      18|      23|      83|     100|       3
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   83-  100 (27.90/21.72)	EALEREQKLREQQRLQEK
  107-  124 (27.71/21.52)	EQEEERKRLEEARKSSEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.51|      11|      16|     221|     233|       4
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  221-  231 (20.56/12.93)	LAPPQDKNPGN
  239-  249 (20.95/ 6.36)	MTPSNGRDPND
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10408 with Med2 domain of Kingdom Fungi
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