<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10400

Description LAMI_0D06678g1_1
SequenceMTDNSVKEMETRFAQEDGLQTELVREFQAPKGLIMPLRLQFNDLLNTMATIDQNKGKSAHENFQMVRAKVIALNSQIQEFSRQVKGLEPRFESLEKYATEMKTSKFAPLETLSRSSEAAAVQQSKNVSGISGLSGGPSVASGPSPASAAARASYSSANTPNSSVSTPSGAQGAAARKPKRSRAKKNSVSGSMPGSMPSGMSSGMPGSVPGTQPLQQMSLAPQQPQQQQHHQMPMPSANPGQILANMSPANMMSSPMNVISPMNTGLSGVMGSSFSSNSMMTSANKPQTAPQQRQAVPTPQQINMSNITPANILTMSMMDKNMNNPAIRSQPQQQPAQQPQPQQQQQPTPQPRTQTQQLPQVGSNDFTNLDLNNLDLSNLNMDFF
Length384
PositionTail
OrganismLachancea mirantina
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Lachancea.
Aromaticity0.03
Grand average of hydropathy-0.665
Instability index71.21
Isoelectric point9.80
Molecular weight41277.09
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10400
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     126.30|      25|      28|     148|     172|       1
---------------------------------------------------------------------------
  114-  135 (27.22/ 8.84)	...RSSEAAAVQQSKNVSGIS....GLSG
  148-  172 (41.66/17.51)	AAARASYSSANTPNSSVSTPS....GAQG
  241-  268 (31.81/11.60)	QIL.ANMSPANMMSSPMNVISpmntGLSG
  269-  289 (25.60/ 7.88)	VMG.SSFSS.NSMMTSANKPQ....TA..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     164.53|      43|     115|     192|     235|       2
---------------------------------------------------------------------------
  192-  221 (49.23/14.17)	................MPG....................SM...........................PSGMSSGMPGSV.PGTQPLQQMSLAP
  222-  309 (39.19/12.88)	QQPQQQQHHQmPMPsaNPGqilanmspanmmsspmnvisPMntglsgvmgssfssnsmmtsankpqtaPQQRQ.....AV.PTPQQINMSNITP
  313-  335 (33.05/ 7.19)	................LTM....................SM..............................MDKNMNNPA.IRSQPQQQ....P
  337-  359 (43.06/11.68)	QQPQPQQQQQ.PTP..................................................................qPRTQ.TQQL...P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.19|      24|      76|       6|      30|       3
---------------------------------------------------------------------------
    6-   30 (37.82/27.92)	VKEMETRFAQEDGLQTEL.VREFqAP
   84-  108 (38.38/23.54)	VKGLEPRFESLEKYATEMkTSKF.AP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10400 with Med3 domain of Kingdom Fungi
Unable to open file!