<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10394

Description LANO_0C03378g1_1
SequenceMTADVRHQNKLTKCFDDIMKAAAEMLVQQQIKSIQLSSNIAPGFTQSQHKLLGEKVHTFHSVLDDIDLTLTTAKSCVDKFATEATERRQKLLEEQRQQQKLKEEQEERERRLVEAQRVPEPAPPSSADFTESTPGAFLNEISKTEIAGSKPNSKASNASKSDADSGKKSGNSNSNYGTDFNDLNDLDLSMFGGMEQNDLGLADFGEEQMRTNIEKTAANENAYTTSMGPSNNDDPSQALNNDNNAANPDSYLTLNDFNDLGLDWNASEGQNGLDEFSI
Length278
PositionTail
OrganismLachancea nothofagi CBS 11611
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Lachancea.
Aromaticity0.05
Grand average of hydropathy-0.882
Instability index44.04
Isoelectric point4.55
Molecular weight30634.04
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10394
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.47|      12|      14|     145|     157|       1
---------------------------------------------------------------------------
  145-  157 (16.40/13.71)	EiAGSKPNSKASN
  162-  173 (21.06/12.46)	D.ADSGKKSGNSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.85|      26|      72|     176|     204|       2
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  176-  204 (41.38/26.69)	YGTdFNDLNDLDLSMFGGMEQNdlGLADF
  251-  276 (50.46/23.46)	YLT.LNDFNDLGLDWNASEGQN..GLDEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.65|      19|      19|      78|      96|       3
---------------------------------------------------------------------------
   78-   96 (31.50/21.34)	DKFATEATERRQKLLEEQR
   99-  117 (31.15/21.04)	QKLKEEQEERERRLVEAQR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10394 with Med2 domain of Kingdom Fungi
Unable to open file!