<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10388

Description LAMI_0C01420g1_1
SequenceMSNATGVKENARQQNKLTACFDEIMKLSAEMLVQQQMKTIQLSSDMIKGFSHNQQKLLGEKIHMFHTILDDVDLTLSSSQDFVNRIAGEAVKKKQDKIKEEERLRLKDEEEARKREEMNKKVTNTVHSDMGGPAAGENLTFGEEPDAKNGSSMPSNFGDLNDFGLSMFGGIESNDLLAEFNTNTNAGLPAGNNEEDNKPNMIAMNQAENKNEVNSNNQNMDNNPDSYLTLNDFNDLGLDWNGGDGQNELDMNEFNI
Length256
PositionTail
OrganismLachancea mirantina
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Lachancea.
Aromaticity0.05
Grand average of hydropathy-0.886
Instability index40.42
Isoelectric point4.53
Molecular weight28560.19
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10388
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.40|      21|      22|     178|     199|       1
---------------------------------------------------------------------------
  178-  199 (33.72/17.52)	AeFNTNTNAGLPAGNNEE.DNKP
  203-  224 (33.68/13.94)	A.MNQAENKNEVNSNNQNmDNNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.65|      18|      72|     159|     176|       2
---------------------------------------------------------------------------
  159-  176 (34.25/19.15)	DLNDFGLSMFGGIESNDL
  232-  249 (36.40/20.76)	DFNDLGLDWNGGDGQNEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.35|      16|      24|     116|     131|       3
---------------------------------------------------------------------------
  116-  131 (28.14/18.09)	EEMNKKVTNTVHSDMG
  143-  158 (29.21/19.03)	EEPDAKNGSSMPSNFG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10388 with Med2 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVKKKQDKIKEEERLRLKDEEEARKREEMNKKVTNTVHSDMGGPAAGENLTFGEEPDAKNGSSMPSN
2) LLAEFNTNTNAGLPAGNNEEDNKPNMIAMNQAENKNEVNSNNQNMDNNPDSYLTLNDFND
90
176
156
235










Molecular Recognition Features






MoRF SequenceStartStop




1) NELDMNEFNI
2) NNPDSYLTLNDFNDLGLDWNGGDG
247
222
256
245