<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10380

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMVENQSKADHVVNEDVRKIPLAIDPNLIRPLPSFVPPTNDIGSEDQLDNNTEQTPAASQSLINNPYETYGNLPLDKLIPIILQSRGPGSKFADLSEEALLEEIAKEPTQTHSIANGDIDIDMNDSEATGSAGDQILIPQPIEGTLNEDEENDMTHEQFQQLRKNAVLSLDLALNESSLALEFVSLLLSSVRPSAATASMSPFLKKTVPSASLNAEKVPYEKPKESEIMEGNLVTKGWKLRSLEESRLLMKETHKALELTVEREQNYWSKLSHYISRKDVVFRMKDKETGERTLGLKYGYEDSGSRYKQERGIAILRHEPKNNTLEIVPSETQQASALGRLNQERFLRVRIFNKIEEEDDYILSGETSLDELLIPSNNLAEEQDIRRQIARLQFFIFEKELMFHMKKEAANLISYGVSIENENKITVEFATEKMEFEMISLTDDIVMNRQQDAPKTNDKKARLILVMLRMLLVTMFKKQLKRNLVLEQKGESAPKNSPRSQNHEVLLLRPILGKFRHANYLDLLQNVVKTYVLDVVEGATLKDSTIEKTKSSDTFGEQGFDKHIVKLDREIKLFESILRKPRTYLTLLLPSAGEIEFGLESSNYCNASTTVKYINDSGTTLFNTKFSNFKELEDFLHFIVSEYVKENGTQV
Length650
PositionHead
OrganismLachancea dasiensis CBS 10888
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Lachancea.
Aromaticity0.07
Grand average of hydropathy-0.500
Instability index46.33
Isoelectric point5.17
Molecular weight73895.97
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
core mediator complex	GO:0070847	IEA:EnsemblFungi
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
activating transcription factor binding	GO:0033613	IEA:EnsemblFungi
RNA polymerase II complex recruiting activity	GO:0001139	IEA:EnsemblFungi
RNA polymerase II core promoter sequence-specific DNA binding	GO:0000979	IEA:EnsemblFungi
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IEA:EnsemblFungi









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10380
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     186.91|      61|     213|     305|     375|       2
---------------------------------------------------------------------------
  315-  375 (99.62/72.07)	LRHEPKNNTLEIVPSETQQASALGRLNQERFLRVRIFNK.IEEED......DYILSGETSLDELLIPS
  523-  590 (87.29/46.95)	LQNVVKTYVLDVVEGATLKDSTIEKTKSSDTFGEQGFDKhIVKLDreiklfESILRKPRTYLTLLLPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.13|      37|      72|      38|      76|       4
---------------------------------------------------------------------------
   38-   76 (62.21/43.99)	TNDIGSED.QLD.NNTEQT.PAASQSLINNPYEtyGNLPLDK
  110-  149 (52.92/30.94)	THSIANGDiDIDmNDSEATgSAGDQILIPQPIE..GTLNEDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.55|      32|      39|     440|     471|       8
---------------------------------------------------------------------------
  440-  471 (52.12/24.26)	LTDDIVMNRQ.QDAPKTNDKKARLILVMLRMLL
  479-  511 (47.43/21.62)	LKRNLVLEQKgESAPKNSPRSQNHEVLLLRPIL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10380 with Med17 domain of Kingdom Fungi
Unable to open file!