Description | Transcription mediator subunit Med12 |
Sequence | MGVQPRPPQQRTLSSSGLSVQRPTQQRTLSAQYLPQSPVRKDNLIDLTGDANDAAVAQNRYGTLPRRGGSRLKLELSNEAMLAQHAVSENPKTLTPSRLMPKNEASNLTDKSSPASAKGQPVDADNPPMPMPKRRPRFVVPAAAKDAPAPVIAVKKDGRPKPYHIETPSVAPRYAPFSKPRTDAAAKPGFGGSSSGARDIPDMGHADFFPWTGNHPEDQYTESIIKNGYYDKQPQASVETQSAKAALFPALKHKSGLNLLSNIFVGVLNQRKLNGQISSPSTFKPPPRVTLTDTKREMWLRDLANPSISLRRLSRTIPHGIRGKVLLDHCLNKNVPTERAVWLVKCVGANEIRAFKRKGNGPGPFVLGGEAKWLRDWTVFVEQFVEGVSTAFGDNDWKAKVQYAIRLATHLYAEQLLDRDHYMDWLVSGLENSTQSKLPMWILTTQIYWKDLLRLRRYGRRLVNALLSHLNTIHNDPDRDILVQLSTRLTSLLTPLLSAYSDNFVSPATWFKYRDALLASIPIENDFAQNAFKWINVRNEQLVASASNSQPANRQILVKHLDTSFMSLYSPDLAMQCWAVSEDKGMIVRTLLEWCTSSHRPGMAKVYITASLLRTWVATGVDMTTAILEFLSHSPPTETTSKKVFHQLVSEIVRSGDFQLQGYIFWLIARGGLRKPADTEAEGPCATRLLVDLPLHALNSSAQATRASLLRRASYDVNDEAEDINTALKCVQHVMGLPLPPGDPMLQRKPVPVGKLCRLISNSNRALQTEVGARLLQIFTKEIIMTKNGPQVSPGMFNFARAILEAASDYTVLVEIVKLVSRASNPEILASCADTFNVHLPIFAALGVAKELFDALMERLRAVSDEQGPAARPLLASLANLSTLIPGYTNTAVYLRQQLHQCDRNNPIDACSPVSDNMTAQLQDAEGELHEEIEKLLMSGTSVDRPTMDRLFQTVVGRLESCWSKSPDRQRAYSALLGRLRIFDAQHFDVRMTDWVHHISALKARPGLENIYPLLISMGCLTLPIILTTTSVEASRIATNPSVPPNSTTTYMQEVLSLTTMPLPAKTALTPEETYRFYIQQRVAPRQNHKDMVYLVRNALVEFSRLQGVVDLSLLPLVNAAIKDTALQLLKFLVLRDPPSVVQALGIKNPEPALTTLFAQITTKLLLPDAGDGSPLTFETVLELANEFTLPFCQLKLSVGLAADSTTSPGGGEQALTQVDMFSRAMDRAVSANNVMWTSMLPYLSEDITEHLKKQAHLRFLGLFPSQKNPPTADPLSQESTQLAASLLSVVEAILRGRPPVRTSQLTSGMVEKIAELWELLATDDVNKRDLRASILRYWLPALLRFITLHTTVNEPVPAPAQPQAANNMKPPVNAAAFEIRARILIILSGLTLELDNLAFQDTQSSRPLGQQVFDLALLLVDTLPDDVRLQCVRVLLTGGTMQNPASSDVRLRYLFSHMPPPTEQFVLAHRQQLTTQQTGPPRVKMPISMQGTDKLTPFIYRKWEMLSEPTPNVGENDTALSLTLFEAIKIQ |
Length | 1532 |
Position | Kinase |
Organism | Colletotrichum orchidophilum |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Glomerellales> Glomerellaceae> Colletotrichum. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.205 |
Instability index | 43.82 |
Isoelectric point | 9.04 |
Molecular weight | 169802.29 |
Publications |
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
Component of the srb8-11 complex. The srb8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The srb8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 ARBA:ARBA00002895 ECO:0000256 ARBA:ARBA00003744 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP10364 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 299.08| 106| 182| 667| 781| 1 --------------------------------------------------------------------------- 667- 781 (153.15/175.02) LiARGGLRKPAD................TEAEGPCATRLLVDLPLHALNSSAQATRASLLRRASyDVNDE......................................AEDINtALKCVQHVMGLPLPPGDPMLQRKpvpVGKLcrLISNS.......NRALQTEVGaRLLQIFTK 799- 965 (145.93/124.77) F.ARAILEAASDytvlveivklvsrasnPEILASCADTFNVHLPIFAALGVAKELFDALMERLR.AVSDEqgpaarpllaslanlstlipgytntavylrqqlhqcdrNNPID.ACSPVSDNMTAQLQDAEGELHEE...IEKL..LMSGTsvdrptmDRLFQTVVG.RLESCWSK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 333.74| 76| 187| 1259| 1335| 2 --------------------------------------------------------------------------- 1259- 1335 (116.29/56.26) RFLGLFPSQKNPPTADPLSQESTQLAASLLSVVEAIlRGRPPVRTSQLT..............SGMVEKIAELWELLA..TDDVNKRDLRASI 1345- 1432 (103.81/46.76) RFITLHTTVNEPVPAPAQPQAANNMKPPVNAAAFEI.RARILIILSGLTleldnlafqdtqssRPLGQQVFDL.ALLL..VDTLPD.DVRLQC 1451- 1523 (113.63/51.83) RLRYLF.SHMPPPTEQFVLAHRQQLTTQQTGPP....RVKMPI.SMQGT..............DKLTPFIYRKWEMLSepTPNVGENDTALSL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 70.57| 22| 73| 476| 497| 3 --------------------------------------------------------------------------- 476- 497 (38.53/24.14) DP.DRDILVQ.LSTRLTSLLTPLL 550- 573 (32.05/18.80) QPaNRQILVKhLDTSFMSLYSPDL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 65.45| 20| 24| 114| 137| 4 --------------------------------------------------------------------------- 114- 137 (35.20/26.48) PASAKgqpvDADNPPMPMPKR.RPR 141- 161 (30.24/13.39) PAAAK....DAPAPVIAVKKDgRPK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 42.81| 14| 26| 65| 78| 5 --------------------------------------------------------------------------- 65- 78 (25.85/18.05) PRR.GGSRL..KLELSN 91- 107 (16.96/ 8.72) PKTlTPSRLmpKNEASN --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 66.27| 19| 182| 172| 199| 6 --------------------------------------------------------------------------- 172- 190 (34.53/36.10) PRYAPFSKPR.TDAAAKPGF 210- 229 (31.74/12.43) PWTGNHPEDQyTESIIKNGY --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 79.13| 24| 566| 304| 327| 8 --------------------------------------------------------------------------- 304- 327 (42.10/24.27) ANPSI.SLRRLSRTIPHGIRGKVLL 871- 895 (37.03/20.44) ARPLLaSLANLSTLIPGYTNTAVYL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 145.52| 48| 403| 588| 640| 9 --------------------------------------------------------------------------- 588- 640 (75.77/65.80) VRtLLEW....CTSSHRPGMAKVY...ITASLLrtwvATGVDMTTAILE.....FLSHSPPTETT 990- 1049 (69.76/45.33) VR.MTDWvhhiSALKARPGLENIYpllISMGCL....TLPIILTTTSVEasriaTNPSVPPNSTT --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 48.32| 13| 15| 1| 14| 10 --------------------------------------------------------------------------- 1- 14 (23.00/19.08) MGVQpRPPQQRTLS 18- 30 (25.31/14.70) LSVQ.RPTQQRTLS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 55.82| 15| 76| 285| 302| 11 --------------------------------------------------------------------------- 285- 302 (25.92/24.36) PPPRVTLTDTKremWLRD 362- 376 (29.91/18.29) PGPFVLGGEAK...WLRD --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) FIYRKW 2) KRRPRFVVPAAAK | 1499 133 | 1504 145 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab