<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10313
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MDTASIFDQFRNLIINSVENQCSPNQYFIFYNEFFNEKFGIALKKTEPTLSASTGDTNLITDIKNESFPEDAIDSIKAATPPPIDDEQKKKIYEILSSCFIQTLRELSTRSEHFVTVTNYLVQVCFTDYNSSFVNNITEKIYDLGKENEAIVIYFFTKATNYFKSLSDQLIIDDFLVNDVPAFLLPNLVGNYGEMKSRQLFVSLAKLLISMLSKCELKEGNKFQFKDQSLYEKVMNFCESLSETSLMLSKNLYNLIESKFEIAEWKKTHMHADKSPFAIPVETPSITSPLPSALPGTLTSSKQGSILQQSSSNKHFYDVKLIRYYKNMWLNNKIQHCTTDEIDFFPKYQGIEMALNSNNPILPFESAIVDFIDTSFTCFAQFLNNKKYHQALNSNFTLLEKKWYLFIVKRVPLLVEKYCGVNRSYLAVKAVQDLDDKIIKVFRNYYATGRSNSADNDSTDLFDNFDSPSQPELDIRHDFLKSLCMMKLQNPSVLNKVFSNGDEMIDTNTITDHDLVLVKNKQNNFETIHNLKEYLENSFDSFDFESLCFHDTCISDKSESFDIIYMFQNFESISPNSQLIIAETLVNIMETAVEKFDYKLVAKVCALLSFNLGNSLPGIFALVNPNRLVIPLIKFLDDAWDEHKEQVFSTGTENENDSDVESFNDYIYFGFALVFLIYLQEQYKVDVIQTLVKITDVKKLETSFLLQYMQTYKISSKELKLPSTKEPYKVAKLLQDWTNSLFVENSISDELIKNADIKDLAVLVPFMFDQVISIFQSLVTTSIQQQPQNKNEFNAALANFNTIVVNSVEYFSQPFMMIGLVKIVFTLESTIKTLQSICISQDESLLDTFLNILTPLFNESGILSSESKVLQFILYRVTGPRLLLTMKNLKNLKAKEITENSATVNAKLDYLISRLGRICEAANMYDLNPSILEIDPNEPSPFENQDLSPKSSGSSTHTPVYFDFEITSDAPMNKIMNKQCNSFWNLHSSTFYNYDYLQKIIQIVGPDKFFSDIYRSLVFKVETNGIPTAGNTLKKGEKPGDDVDVAMPYLIYFSILLDFNDNNERLQILQFLESPLSSSFVESLESESTDAATTNKTKTEPDTAKASEETANDNDFDMLFGEDSTDNIDDVLMSDSSTKNEGTNLTNCGAAEKIAKFSFLKKNTFAYLFYQYYRNKAYPFESFAKFYQKYLDLLKRSII |
Length | 1199 |
Position | Tail |
Organism | Hanseniaspora osmophila |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Saccharomycodaceae> Hanseniaspora.
|
Aromaticity | 0.12 |
Grand average of hydropathy | -0.231 |
Instability index | 39.36 |
Isoelectric point | 4.84 |
Molecular weight | 137269.26 |
Publications | PubMed=27856586
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP10313
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 91.85| 27| 34| 521| 554| 1
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521- 546 (33.39/19.58) ..........KQNNF.ETIHNLkeYLENSFDSFDFES
547- 577 (35.68/25.86) LCFhdtcisdKSESF.DII.....YMFQNFESISPNS
579- 599 (22.78/ 8.34) LII............aETLVNI...METAVEKFDYK.
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 76.74| 29| 35| 869| 900| 2
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869- 900 (34.77/37.68) V...LQFILYRVtGpRlLLTMKNLKNLKAK..EITEN
904- 937 (41.97/27.67) VnakLDYLISRL.G.R.ICEAANMYDLNPSilEIDPN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 110.69| 35| 448| 2| 65| 3
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2- 49 (50.25/46.35) DTASIFDQFRnliinsvenqcSPNQYFI.FYNEFFneKFGIALKKTEPT
457- 492 (60.43/20.63) DSTDLFDNFD...........SPSQPELdIRHDFL..KSLCMMKLQNPS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 179.59| 59| 448| 607| 670| 4
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607- 670 (98.02/70.14) LLSFNLGNSLPGIFALVNPnrlviPL.IKFLDDAWDEHKEQVFSTGTENENDS.....DVESFNDY.IYFG
1056- 1121 (81.58/48.79) LLDFNDNNERLQILQFLES.....PLsSSFVESLESESTDAATTNKTKTEPDTakaseETANDNDFdMLFG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 84.56| 19| 34| 354| 372| 6
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331- 345 (20.83/11.01) ....NNKIQHCTTDEIDFF
354- 372 (34.05/23.60) ALNSNNPILPFESAIVDFI
391- 407 (29.68/19.44) ALNSNFTLL..EKKWYLFI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 78.55| 20| 27| 768| 787| 7
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768- 787 (33.50/22.92) FDQVISIFQSLVTTSIQ..QQP
793- 814 (25.69/15.71) FNAALANFNTIVVNSVEyfSQP
827- 842 (19.36/ 9.87) LESTIKTLQSI...CIS..QD.
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 39.81| 11| 27| 675| 685| 8
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675- 685 (19.51/13.83) FLIYLQEQYKV
704- 714 (20.30/14.77) FLLQYMQTYKI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 43.17| 12| 27| 161| 172| 9
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161- 172 (21.02/11.69) NYFKSLSDQLII
191- 202 (22.15/12.70) NYGEMKSRQLFV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 51.26| 15| 426| 294| 308| 11
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294- 308 (26.16/16.75) LPGTLTSSKQGSILQ
721- 735 (25.09/15.75) LPSTKEPYKVAKLLQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 57.42| 13| 35| 211| 223| 12
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211- 223 (23.84/15.12) MLSKC..ELKEGNKF
234- 246 (18.67/10.08) VMNFC..ESLSETSL
247- 260 (14.91/ 6.41) MLSKNlyNLIE.SKF
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