<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10287

Description Uncharacterized protein
SequenceMSDKNIVSNISSLSLNDTVTPSLSAKKSLLSTSLAHDKQLKLDQEAQAQALQQQQQQQRSVPISLNQGSGCSGEPEEPSLLASSVGKDVGGRLVPSSSAISLFSLNNESETDDQQQQQQQQQQQQQIHLQQQQQHLSAHQQGPSAFQERKNSLSSLSSTSTTTGMHNSIHLQRHQHYFSNTLTPLSSMSTTPTFKKIGLANSSNKFNNTVSTTASASPRQIPAMSNSNTSGNFNAASMGVSVTVGGSNVPPEPNLEPTSLGGSPSMFYLSSRTPPPSLTNSSYLTLNNMNAYKQQQQQQQQQQQLQQQQQQLPAGAIRIQNSQHLHHQQQRSRDLNLNLNMSDISPNLFPIGTPNDAPPMTPLLLNNSNGEDFRFINPGISSKSPNIGKENYERFTE
Length397
PositionMiddle
OrganismPachysolen tannophilus NRRL Y-2460
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Pachysolen.
Aromaticity0.04
Grand average of hydropathy-0.816
Instability index69.36
Isoelectric point7.20
Molecular weight43327.08
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10287
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     432.80|     130|     178|       5|     152|       1
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    5-  100 (104.23/46.16)	..............................................................NIVSNISSLSlndtVTPSLSakksllSTSLAHDKQlKLDQEAQAQALQQQQQQQRSVPISLN..........QGSGCSGEPEEPSLLASSVGKDVGGRLVPSSSAI
  101-  148 (42.72/15.43)	SLF.........SLNNES.....ETDDQQQQQQQQQQQQQIHLQQQQQHLSAhqqGPSAFQE..........................................................................................................
  153-  255 (166.39/58.00)	.LS.........SLSSTS.....TTTGMHNS.........IHLQRHQHYFS...........NTLTPLSSMS....TTPTFK......KIGLANSSN.KFNNTVSTTA....SASPRQIPAMSN............SNTSGNFNAASM...GVSVTVGGSNVPPEPNL
  265-  372 (119.47/39.80)	SMFylssrtpppSLTNSSyltlnNMNAYKQQQQQQQQQQQ..LQQQQQQLPA...GAIRIQN...........................................SQHLHHQQQRSRDLNLNLNmsdispnlfpIGTPNDAPPMTPLLLNNSNGED............
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10287 with Med9 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ISLFSLNNESETDDQQQQQQQQQQQQQIHLQQQQQHLSAHQQGPSAFQERKNSLSSLSSTSTTTGMHNSIHLQRHQHYFSNTLTPL
2) LAHDKQLKLDQEAQAQALQQQQQQQRSVPISLNQGSGCSGEPEEPSLLASSVGKD
3) SLTNSSYLTLNNMNAYKQQQQQQQQQQQLQQQQQQLPAGAIRIQNSQHLHHQQQRSRDLNLNLNMSDISPNLFPIGTPNDAPPMTPLLLNNSNGEDFRFINPGISSKSPNIGKENYERFTE
4) STTPTFKKIGLANSSNKFNNTVSTTASASPRQIPAMSNSNTSGNFNAASMGVSVTVGGSNVPPEPNLEPTSLGGSPSMFYLSSRTP
100
34
277
189
185
88
397
274










Molecular Recognition Features






MoRF SequenceStartStop




NANANA