<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10261
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MTYLECVDGKTWQLAPPTCFQIASFDKAVTASKKDSSDIHQNQTQHRQHPLPSSNRNDSTTLISNVLFSNTGWDLFVADDDGHVSILVTGIKKQIQHQQDVPQPPGLSNSAAPNTSQSPPLQQTLANSYSTTQYSRTSFNTAELLYSDNTTLPLPSLKTHTSRRLNKMVTVKWLNIDKQVIANSPAVKVQATSEQPVLNGCASKLGAAVQDSNGYYYSYNAQQYKSYGTMHPLSTKQACIGVRRSGEVCLWHQEDHGIEYRRVTAHLDLDQGDEILYASIGFKRDGKVIVGVSCPGSNSVKLFEIFIDWGYLLDAAKNLPKMPTYRTPDNMRFPPKLIVTKLFEIDVNDTDSSCSRLTSIDFISPNYHQSTEFDVLLTFENDGHYGSKAVDVENKSPSKSTILRYHLEDINQEDFVRSAFKTIANKRNIDSSSTSLSAMNKKTISKLVFKQKMTFNESIICIESLNLDMMICISFANGMMEVFNRSTMKQIKNIYSEPSSTNTDDSLLPSLIFSLFDAGFEFPRMNFQPEYTCISPNICCYIALPVDSSQLYIRSVESVTTKENTPPNKKGLLLATTAAIALRHTSACYFGYSTDDLMATIRSEIDSTEKRTNANQAYRLLISILQECQRAINLTIDISTEQTDKMLQNQPLQRILTLQLSLGTNLNWKRNKSGKIAWALVNLKFVTSSIMYTIHTIYSNMQRFAKKGLNTPDTLANARAREESIISVLGIIRWCMDYIIGLNQELLTLATVFKSGDTKKIEKCIADSIMVPLILGKVPRAFLIFAISNIRRLFSFVQKFVEKNDPWLTSLITPENQMGAFSYVEKQMLIVDSPISLPVMPTYKSGSASGSSLSNGMGSSSSTSSAALTRSLVAHPTMEAYYRLGAVLNNSPVSLNVFEKFLTEADVPLRNMRLDQSTSLAIEQQIVSQGYISKTFVEPLKKLCDVYEKSVLIAGNVDVTELYFRNVSWLKLGINGDDDFEEGDDDDDENNNNDFTDYSMFGKYNKKLIESNSYDGLLVDTLRKRLLKPIDFIERAEKSSNGNMNGSPATNIGNLSGEYSSINTLAMRRCIRCGAISSVNEVSTSVKDEDATLSAVTFVSNPVFTHYQRICFCGGAWANM |
Length | 1120 |
Position | Tail |
Organism | [Candida] arabinofermentans NRRL YB-2248 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Pichiaceae> Ogataea> Ogataea/Candida clade.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.272 |
Instability index | 47.52 |
Isoelectric point | 6.53 |
Molecular weight | 125007.52 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP10261
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 251.99| 79| 89| 58| 145| 1
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58- 145 (120.00/107.17) DSTTLISNVLFSNTGWDLfvaddDGHVSILVTGIKKQ.......IQHQQDVPQPpgLSNSAAPNTSQSPPLQQTLANSYSTTQYSrtSFNTAELL
148- 233 (131.99/91.05) DNTTLPLPSLKTHTSRRL.....NKMVTVKWLNIDKQvianspaVKVQATSEQP..VLNGCASKLGAAVQDSNGYYYSYNAQQYK..SYGTMHPL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 112.78| 34| 60| 808| 843| 2
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808- 843 (54.79/49.61) LTSLITPENQMGAfsYVEKQMLIVDSPISLPVMPTY
868- 901 (57.99/44.48) LTRSLVAHPTMEA..YYRLGAVLNNSPVSLNVFEKF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 180.47| 61| 102| 558| 628| 4
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558- 628 (88.76/80.21) SVTTKENTPPNKKGLLlaTTAAIALRhtsacyfgYSTDDLMATI...........RSEIDSTEKRTNANQAYRLLISIL...QEC
661- 735 (91.72/58.73) SLGTNLNWKRNKSGKI..AWALVNLK........FVTSSIMYTIhtiysnmqrfaKKGLNTPDTLANARAREESIISVLgiiRWC
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 89.26| 32| 482| 425| 461| 5
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425- 461 (37.42/47.74) NKRnIDsSSTSLsAMNKKTISKLVFKQkmTFNESI..IC
911- 944 (51.84/36.78) NMR.LD.QSTSL.AIEQQIVSQGYISK..TFVEPLkkLC
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 48.64| 17| 60| 334| 360| 6
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301- 322 (24.02/17.09) KLFEIFIDwgyllD...AAKNLPKM
341- 360 (24.61/16.67) KLFEIDVN.....DtdsSCSRLTSI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 40.85| 11| 39| 238| 248| 9
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238- 248 (21.12/12.36) ACIGVRRSGEV
278- 288 (19.73/11.10) ASIGFKRDGKV
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