<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10259

Description Uncharacterized protein
SequenceMSANYWNSSQRNQWQFTRDELTIARNSLNTTTTTTTTYDSTIKLDINLRIYLHQLIIKLGRKLNLRQIILSTSEIYLQRFLLKVNINEINLYLLITTCIYISCKIEENPQHIRTLLSESRNCWPEFIPNDLTKLAEFEFYLIEELNCYLIIHHPYNSLIELTKIFKNDLTIDEIQSCWSIINDSYITDLHLLFPPHIIAISSIYLTLILSNDEFKLSGGDISKFSNSKIENLVRFLSISNVDLSEVIESVQELLTLYESWCYYDEIYIRNGVHNMLLNK
Length279
PositionKinase
Organism[Candida] arabinofermentans NRRL YB-2248
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Pichiaceae> Ogataea> Ogataea/Candida clade.
Aromaticity0.11
Grand average of hydropathy-0.039
Instability index51.43
Isoelectric point5.29
Molecular weight32837.33
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10259
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     178.48|      48|      54|      86|     137|       1
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   44-   80 (43.87/22.80)	LDiNLRIYLhqLI.......IKLGRKL..NLRQI..ILSTSE.............IYLQRF
   86-  137 (78.74/58.04)	IN.EINLYL..LI....TTCIYISCKIEENPQHIrtLLSESRNCWPefIPND..LTKLAEF
  142-  189 (55.87/30.93)	IE.ELNCYL..IIhhpyNSLIELT.KIFKNDLTI....DEIQSCWS..IINDsyITDL...
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10259 with CycC domain of Kingdom Fungi
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