<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10252
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MTIDSRNSISIPSTEIELTLNSLISISLRKNFHPLTFNKLFKEFKHRVISINPSDTEIDLLPLFSGCSNHPLQLKYIFEVLVQNDLNNNFDDLARLFSEYMSNLSRNDQTIIIIFFNQMRDEFPWSKLVENDQFLTGFCNYLRYIEGSDTSSYEDDSKMILMVSKFIINLLKGSSKIDRQLNDAVKEYLDFLRRSGFEPSYDYLHSFYSNYSHSTIKKGYQVSGFTTSKDHLNPKINSKVLKLKKIVWLSQHVTIEFTSINENFIKSFKSLLNLSSVATSATNTSITYELLTSVFDCLSLSTSKTRHLWIHFILIKLPQLLKTLNINQLKLGNSLMTVFESIDFDKYKEILIKLLRNLAEMDLIKTQDFSKLFPDIAVITPPSPKMSKDEFLSAYDQKFHQMNPEFVSIEEAEIHSFINQINEALSLKSVLSEQVNSSISNFIKENDSLRLRRLLISLTLNEEILEYVLLNESPYEFILPLVAYLNKNLNELPEARNSKQEAQDDEMMEDLDMSGGESTNVQDFYTDFGSILIFLKLITMKFNLNLLQVPGNYASLQLINNWDSTKNDTYLTNVQEQGSQLNNMIDEWILSLFDSSNTDGLSDDLIKACSINDYYYMLPDILKEAVISCSLHLIDDDSLLSGLEYFHQPFLISNMASILKSLLCFTWANNKEADIAILVKVLNQLCHADLSGEVQILHTLIMKIMNEDLTKALTPYKDNTDVASFLSKLEPLDSNVSNGTDLNNLITYVIDPTFQEAKFELSMIFKIADSYSSNVDWFYNKLLFLLESEHTKQADLAEILSYEVISLLIVNYASSKPTSNLKYWRSVLNAASEKSEGSVIYNRKGVDDLEIDSGVKDSSDGDDSMNGKDENKFGADMTFDSNFFGFIEEPKDYDSDQQTEVKLENSTVEEDVTQVELGDSFVSNILVLLQSKNDDVVKHLVSKIDGNLTELQVGL |
Length | 955 |
Position | Tail |
Organism | [Candida] arabinofermentans NRRL YB-2248 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Pichiaceae> Ogataea> Ogataea/Candida clade.
|
Aromaticity | 0.10 |
Grand average of hydropathy | -0.188 |
Instability index | 38.74 |
Isoelectric point | 4.69 |
Molecular weight | 109066.41 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP10252
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 100.79| 23| 23| 417| 439| 1
---------------------------------------------------------------------------
264- 286 (34.87/23.67) FIKSFKSLLNLSSVA.TSATNTSI
417- 439 (36.41/25.11) FINQINEALSLKSVL.SEQVNSSI
442- 464 (29.51/18.67) FIKE.NDSLRLRRLLiSLTLNEEI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 49.81| 16| 21| 97| 117| 2
---------------------------------------------------------------------------
101- 117 (25.30/22.34) M......SNLSRNDQtIIIIFFN
119- 140 (24.51/ 7.24) MrdefpwSKLVENDQ.FLTGFCN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 59.10| 17| 21| 809| 825| 3
---------------------------------------------------------------------------
809- 825 (31.30/20.57) IVNYASSKPTSNLKYWR
827- 843 (27.80/17.46) VLNAASEKSEGSVIYNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 176.01| 56| 74| 469| 528| 4
---------------------------------------------------------------------------
469- 525 (91.20/52.34) LLnESPYEFI.LPLVAYLNKNLNELPEARNSKQEAQDDEMMEDLDMSGGESTN.............VQDFY
546- 615 (84.81/38.77) LL.QVPGNYAsLQLINNWDSTKNDTYLTNVQEQGSQLNNMIDEWILSLFDSSNtdglsddlikacsINDYY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 97.47| 31| 300| 9| 65| 6
---------------------------------------------------------------------------
30- 65 (42.46/79.19) KNfHPLTFNKLFKEFKHRVISiNPSDteiDLLPLFS
68- 98 (55.00/28.12) SN.HPLQLKYIFEVLVQNDLN.NNFD...DLARLFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 40.38| 10| 25| 195| 204| 7
---------------------------------------------------------------------------
195- 204 (20.86/12.00) SGFEPSYDYL
223- 232 (19.51/10.76) SGFTTSKDHL
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 34.90| 11| 19| 599| 610| 11
---------------------------------------------------------------------------
599- 610 (15.72/12.70) DGLSDDLIkACS
620- 630 (19.18/10.45) DILKEAVI.SCS
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