<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10246

Description Mediator of RNA polymerase II transcription subunit 11
SequenceMSTEKDISFIKSRLDSLHSIDSKIVTLLDNLSSTVENLKDGKLTGDKQNVENFRDNMSQFYNNLSFTSINLRKEVKILDNRINSQLNNSNLLPIQVNKKATWVNEDKMKQEIEEMDRVLDWDEEKLAKARKEAERFVKEPKAQTSQTKQEGDLPNQAVKVETEQATKVTDNEEFPTEIKPKLEDVELPNIEANGGDGTGTGAEAADIDLDMDMGLEDEEMMNV
Length223
PositionHead
Organism[Candida] arabinofermentans NRRL YB-2248
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Pichiaceae> Ogataea> Ogataea/Candida clade.
Aromaticity0.04
Grand average of hydropathy-0.856
Instability index41.60
Isoelectric point4.53
Molecular weight25295.89
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364147

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10246
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.52|      30|      31|     161|     190|       1
---------------------------------------------------------------------------
  161-  190 (48.09/23.39)	ETEQATKV.TDNEEFPTEIKPKLEDVELPNI
  193-  223 (43.44/20.62)	NGGDGTGTgAEAADIDLDMDMGLEDEEMMNV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.49|      24|      24|      47|      70|       2
---------------------------------------------------------------------------
   29-   44 (16.69/ 6.17)	.........DNLSSTVE.NLKDGKLT
   47-   70 (42.28/24.71)	KQ.NVENFRDNMSQFYN.NLSFTSIN
   73-   97 (28.53/14.75)	KEvKILDNRIN.SQLNNsNLLPIQVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.14|      15|      16|     102|     117|       3
---------------------------------------------------------------------------
  102-  117 (24.11/20.02)	WvNEDKMKQEIEEMDR
  121-  135 (24.03/14.49)	W.DEEKLAKARKEAER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10246 with Med11 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ARKEAERFVKEPKAQTSQTKQEGDLPNQAVKVETEQATKVTDNEEFPTEIKPKLEDVELPNIEANGGDGTGTGAEAADIDLDMDMGLEDEEMMNV
129
223










Molecular Recognition Features






MoRF SequenceStartStop




1) IKPKLEDVELPNI
2) TGAEAADIDLDMDMGLEDEEMMNV
178
200
190
223