<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10238

Description GAL11-domain-containing protein (Fragment)
SequenceMNNMHQPQGMNSWHSMYAVSDRQKVVQILSNTLRDMQGANYDAQRGATIAQEFEKYTFMKSQSRDEYLRLIKQKIQQLRTNMNNRNGAPMPQQAQGQSQQMAQPLQQQQQQQQQHQPPQQQLQLNMVNARAGSIQGQAGPNMSQNQQKMKPQNMNFLQQQAQARQQSAAQIQAQMRNNYIPGNQQQPQQQQQQQQQPPQVPQQQQQQQQAPQPVSQPTQTMDDNLSNLQTTHQQIQQISNLIRNAPIPPALLSKIPNIPAGVTTWTQVFDCYQKKIIPASAMPLIKEIHNTHLQLAIRQQHQQKLNQNQQRMGQQNPNGPQIPQQQPQQQQPPQQQQQQQTQQQQGNPNVPLNQLVNSNNNTPVMNNMGFNINNLTPQQKQQFLQRQMQQRNSMAGQNPQQMMQPQQQTQQSTIPVPQLIPQPQTQQSHPQQSGNQAGQPKPPNFQITQQDIMKYSADAMTLLSRVQGNRGIQTTLDQTQKESFIRKYILHQKTQLWKQQNGLATANSGSPVMNNQAMNQKRLLQPQPNGSQNQMGQQIPQSLQVPGNQQIPQSQMPNPVQQQLPMMGNMNMGQTPAMKSQVQMNTLSSPLMAQRGGPMNQMQMNNTNAMNPNANFANQTQPQNSQNQQNQQGQQNDQANRLNARNSIAAILPQLTDDMKLRLRQLLEEVSRNNVVLKDVTSLLSAQEKTKVRETMVKIAQQYSNVDNIISYFFILTKITEGTKRLIQMKYMTKNIMENLQRGIYLAGPDLLEKLRSQYQKYFDYVKEQFSLRRQQLQNQQGQGNQGQPQNQAKPVAQNQGQIPMPGNQQAQVNLGPNNAWPSVAPPNQGNNFQQRNANSSPMIPNSNVSPLMGNQMSPAGGPHAAQKQPKPPAPQAKKTPNPPARRKGSNKGPVNVGSIPTPAGTAASPGALTNAIKTPNSIATPQVGQTQSNKNTPTGQSPNYTIKNSVAAPIPTTDADIFTHSKADSKAAKRRELSNSDPEKFFYASLANLLELDDSLAEMKDKAVTVTESTTTSPLITNGKTAKSPLSPASNSGEWTCEIRPAAITSAFRQVDSIRELVSTDVIENCTKMAVDEASQSAKDSSIGIKRDIDMVDDNDDIDNLFSEKKLKVEGSDHDFMYEPVGFDEWKDFVVSIIQ
Length1140
PositionTail
OrganismSuhomyces tanzawaensis NRRL Y-17324
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Debaryomycetaceae> Suhomyces.
Aromaticity0.04
Grand average of hydropathy-0.981
Instability index58.65
Isoelectric point9.77
Molecular weight127654.74
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10238
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     749.77|      76|      77|      85|     160|       1
---------------------------------------------------------------------------
   11-  120 (85.10/15.28)	NSWH..S.MyaVSDRQKvvqilsntlrD.M....QGanydaQRGATIAQEF.EKytfM...KSQ.SrdeyLR...LIK...QKiqqlrtnmnnRN...GAPMPQQAQ......GQ.....SQQM......AQPLQ....QQQQ...QQQ..QHQPPQQ
  121-  199 (115.39/23.82)	QLQL..N.M..VNARAG..........S.I....QG.....QAGPNMSQNQ.QK...M...KPQ.N....MN...FLQ...QQ.......aqaRQ...QSAAQIQAQmrnnyiPG.....NQQ........QP.......QQQ...QQQ..QQQPP.Q
  200-  280 (69.28/10.82)	...........VPQQQQ..........Q......QQ.....QAPQPVSQPT.QT...M...D.D.N....LS...NLQtthQQ..iqqisnliRN....APIPPALL......SK.....IPNI......PAGVT....TWTQvfdCYQ..KKIIPAS
  281-  348 (96.89/18.61)	AMPLikE.I..HNTHLQ.........lA.I....RQ.....QHQQKLNQNQ.QR...M...G...............Q...QN..........PN...GPQIPQQ.Q......PQ.....QQQ.........PPQ....QQQQ...QQT..QQQQGNP
  349-  417 (77.41/13.11)	NVPL..NqL..VNSNNN..........TpV....M.........NNMGFNI.NN...L...TPQ.Q...kQQ...FLQ...RQ.......mqqRN...S..MAGQ.........N.....PQQM......MQP........QQ...QTQ..QSTIPVP
  418-  492 (69.32/10.83)	QL...........IPQP..........Q.T....Q......QSHPQQSGNQaGQ...P...KPP.N....FQ...ITQ...QD.......imkYS...ADAMTLLSR......VQ.....GNRG......IQTTL....DQTQ...KESfiRKYILHQ
  493-  562 (77.41/13.11)	KTQL.......WKQQNG..........L.A....TA.....NSGSPV..........M...NNQ.A....MNqkrLLQ...PQ...................PNGSQ......NQ....mGQQI......PQSLQvpgnQQIP...QSQ..MPNPVQQ
  563-  635 (80.43/13.97)	Q..L..P.M..M....G..........N.M...............NMGQTP.A....M...KSQvQ....MN...TLS...SP.......lmaQR...GGPMNQMQM......NN.....TNAMnpnanfANQTQ....PQNS...QNQ..QNQQGQQ
  793-  875 (78.53/13.43)	AKPV..A.....QNQ.G..........Q.IpmpgNQ.....QAQVNLGPNN.AW...PsvaPPN.Q....GN...NFQ....Q..........RNansSPMIPN.........SNvsplmGNQM.....sPAG.G....PHAA...QKQ...PKPPAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.07|      18|      38|     876|     905|       2
---------------------------------------------------------------------------
  876-  896 (28.69/11.30)	QAKKTPN....PPARRKGSNKgpvN
  915-  936 (27.37/14.37)	NAIKTPNsiatPQVGQTQSNK...N
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.50|      21|      30|     690|     710|       3
---------------------------------------------------------------------------
  690-  710 (34.04/24.04)	TKVRETMVKIAQQYSNVDNII
  717-  737 (35.45/25.37)	TKITEGTKRLIQMKYMTKNIM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10238 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASAMPLIKEIHNTHLQLAIRQQHQQKLNQNQQRMGQQNPNGPQIPQQQPQQQQPPQQQQQQQTQQQQGNPNVPLNQLVNSNNNTPVMNNMGFNINNLTPQQKQQFLQRQMQQRNSMAGQNPQQMMQPQQQTQQSTIPVPQLIPQPQTQQSHPQQSGNQAGQPKPPNFQITQQDIMK
2) KDKAVTVTESTTTSPLITNGKTAKSPLSPASNS
3) LWKQQNGLATANSGSPVMNNQAMNQKRLLQPQPNGSQNQMGQQIPQSLQVPGNQQIPQSQMPNPVQQQLPMMGNMNMGQTPAMKSQVQMNTLSSPLMAQRGGPMNQMQMNNTNAMNPNANFANQTQPQNSQNQQNQQGQQNDQANRLNARNSIA
4) RLIKQKIQQLRTNMNNRNGAPMPQQAQGQSQQMAQPLQQQQQQQQQHQPPQQQLQLNMVNARAGSIQGQAGPNMSQNQQKMKPQNMNFLQQQAQARQQSAAQIQAQMRNNYIPGNQQQPQQQQQQQQQPPQVPQQQQQQQQAPQPVSQPTQTMDDNLSNLQTTHQQIQQISNLIRNAPIPPALLSKIPNIP
5) RRQQLQNQQGQGNQGQPQNQAKPVAQNQGQIPMPGNQQAQVNLGPNNAWPSVAPPNQGNNFQQRNANSSPMIPNSNVSPLMGNQMSPAGGPHAAQKQPKPPAPQAKKTPNPPARRKGSNKGPVNVGSIPTPAGTAASPGALTNAIKTPNSIATPQVGQTQSNKNTPTGQSPNYTIKNSVAAPIPTTDADIFTHSKADSKAAKRRELS
6) SADAMTLLSRVQGNRGIQTTLDQTQKESFI
279
1005
496
69
773
456
454
1037
649
259
979
485










Molecular Recognition Features






MoRF SequenceStartStop




NANANA