<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10229

Description SOH1-domain-containing protein
SequenceMTPLIMETLPTRWEIELEFVQSLCNIQYLQYLTQNNYLKDERFIEYLKYLRYWQKPEYAKYLVYPNCLHVLLLLQNKEFRDGLVRVEVVEGLMNEMVGRWAGTNSNGNETQTNGEAEEVAEKEAGNEKKEPIEMALKVSPAELLFLVSFLANFVVGKIVHYFSPDEEVYSYYTNKKNFINQLFVKRGWGWTTLFVAVFYALVLTRSKPAGAKREPMVRVIGAAAVRYALVTLWWVLFTQWCFGLPLMDKIFVWTGGKCEVNSVKEGFEELFEMASHPFNTEAVKSDLQTFTSTVVSSYQCRRLKGSWTGGHDPSGHVFLMIHSSLYMFLEGLPFWASWTQLWNETTKVARQIRHENRWNGIGPYVHSNPHILFVALIGLWWFMLFMTNVYFHSIAEKFVGLLFGYLGIFAVYYAPRWLATETKKNRVD
Length428
PositionMiddle
OrganismSuhomyces tanzawaensis NRRL Y-17324
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Debaryomycetaceae> Suhomyces.
Aromaticity0.16
Grand average of hydropathy-0.057
Instability index37.37
Isoelectric point7.15
Molecular weight49894.07
Publications









Function






Annotated function


GO - Cellular Component
endoplasmic reticulum membrane	GO:0005789	IEA:UniProtKB-SubCell
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
lipid storage	GO:0019915	IEA:InterPro
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10229
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     410.98|     128|     146|     100|     242|       1
---------------------------------------------------------------------------
  100-  237 (196.21/143.00)	WAGTNSNGNETQtNGeAEEVAEKEAGNEKKEPIEMALKVSPAELlfLVSFLANFVVGKIVHYFSPDEEVY.SYYTNKKNFINQL.FvkrgW.GWTTLFVAVFYALVLTRSKPAGAKREPMVRviGAAAVRY.ALVTLWW.VLF
  253-  385 (214.78/118.02)	WTGGKCEVNSVK.EG.FEELFEMASHPFNTEAVKSDLQTFTSTV..VSSYQCRRLKGSWTGGHDPSGHVFlMIHSSLYMFLEGLpF....WaSWTQLWNETTKVARQIRHENRWNGIGPYVH..SNPHILFvALIGLWWfMLF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.63|      10|      19|      54|      63|       3
---------------------------------------------------------------------------
   54-   63 (18.02/11.90)	QKPEYAKYLV
   75-   84 (17.61/11.48)	QNKEFRDGLV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10229 with Med31 domain of Kingdom Fungi
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