<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10219

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMPTREDMDVQTKHSEPPELQHITTNIVPLSSILDKFAQFAYAELSHVLKMQPNDDDKKKKLLDLLVYLRTQFTRLYVLTNWSHASAHDFNKFIDLLAWLREQSSHFGNLIWSTKSLNQSLLSAKLPNPDLITAMEVLSNGRPTLPTHNFIETRISPQKVLQTLRDLNVVLSMKYALVDDLPEEFTDYDIKDGRIYVYTKDYQFQISALDESTPFFMIDFELSFGKFEKAKNLIRVCNEALRSFQFVNLKRILTNYTMAMKLYLIHQKLNELKTVKHTYSPEKFQITVHYWVNSFVFKYSRLEIGLNKNNEIIYRWFKQGQLAQTFEQVDHIDMFLRDIYHKHSTSILSQIEDLMVNKSLLQINELTGIFYFKNPTPALNMALKKLNVDDFKNINENLQAIRTDLKFTEISSVLSVTGWIPNDLIKLPQVELSKLYNGVRQEPHRLVRFYTRKEWAQNWFLIFVIDTKIRTFIGNIRSVLGQWTLNAPSEVCINSFDYKSSKDVINQVSKKIMTHLISQELTGTNYHVVSHDSIVVETESFVKIPNASKVVMLMFRIDPTNKNNIVVNLKGKLNKIITLDDFIVDSNGVFQIFETIDFKRANILTNIMSKLTKLAKVIELVDYLQKRDMELVSVQLDQVVFKYGDNVCTLKENFDLELPKENPHNICLSSIRRFLVTNGVDDVFKYLMKSNVLISKLNDMSNQAQVDNVSSWNVDKLRYEIISKNATYFSVLYYSNKFKPRHGFSMNIEIKNGALDSFVYLISIDKEDLDANLKRELTSQGNLFKNRASTIKYLVPLSDGIVCDDSGLNYVLDQLHSMVLDIYNVG
Length825
PositionTail
OrganismCyberlindnera jadinii (strain ATCC 18201 / CBS 1600 / CCRC 20928 / JCM 3617 / NBRC 0987 / NRRL Y-1542) (Torula yeast) (Candida utilis)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Phaffomycetaceae> Cyberlindnera.
Aromaticity0.11
Grand average of hydropathy-0.208
Instability index34.51
Isoelectric point8.19
Molecular weight95805.27
Publications
PubMed=27535936

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU365082
GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:UniProtKB-UniRule
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP10219
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     367.28|     126|     140|     101|     240|       1
---------------------------------------------------------------------------
  105-  202 (133.31/118.60)	........................................................................................................................................................................HFGNliwS................TKSLNQSLLSAKLPNPDLITAMEVLSNGRPTLPTHNFIET...........RISP...QKVLQTL....R.DL....NVVLSMKYALVDD..LPEEFTDYDIKDGRIYVyTKDYQ
  203-  236 ( 9.35/ 7.73)	FQISALDESTPFFMIDFELSFGKFE.KAKNliRVC................................................................................................................................................................................................................................................................................
  370-  455 (96.88/66.56)	...................................nealrsfqfvnlkriltnytmamklylihqklnelktvkhtyspekfqitvhywvnsfvfkysrleiglnknneiiyrwfkqgqlaqtfeqvdhidmflrdiyhkhstsilsqiedlmvnksllqineltgifYFKN...P................TPALNMAL..KKLNVDDFKNINENLQAIRTDL...KF..T...........EIS.....SVLSVTgwipN.DLiklpQVELSKLYNGVRQ..EPHRLV.......RFYT.RKEWA
  459-  602 (127.74/94.64)	FLIFVIDTKIRTFIGNIRSVLGQWTlNAPS..EVC.............................................................................................................................................insfdyksskdvinqvSKKIMTHLISQELTG....TNYHVVSHDSIVVETESFVKIpnaskvvmlmfRIDPtnkNNIVVNL....KgKL....NKIITLDDFIVDSngVFQIFETIDFKRANI........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.58|      24|      42|     630|     655|       2
---------------------------------------------------------------------------
  630-  655 (34.75/37.14)	LVSVQLDQvVFKY..GDNVCTLKENfDL
  674-  699 (37.83/27.92)	LVTNGVDD.VFKYlmKSNVLISKLN.DM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.87|      12|      28|      60|      71|       4
---------------------------------------------------------------------------
   60-   71 (20.93/12.95)	KLLDLLVYLRTQ
   91-  102 (22.94/14.89)	KFIDLLAWLREQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10219 with Med14 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA