<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10212
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MTIIRRDRCSNPISWSKNGFIAFAHHTSSTNLSISKLESLRGQSWRLSSKKSYEIKTASQTSCKPIQVVVWSPSGADLLVVDQVGGVSILGTGIVKNGNVHQLSCFEDVEILYQDDAGRCEDESLSKCVAFKWINVDKPVISSSPAVFSEEQNRYNYSVHQYKPYGFLHPNGKSGCFIARRDGSVDFYYQGITMEFKKHRIMLEPAREWVSQASIGFLRDGDVVVVCYCPKDQSLKVYKLSVSWNLKSCEPNFKVEKLLMERLNKIGSNGLTMELDQIEVISPNYSMDTDLDILIAFKGIGCNNRTLLQKYQISTVYKDLRFKTDGGTVEGFPNLVLKAEDYLDGELLDIELKNFDMNVIVTSAAGRVHLRSRKNLQLHIGASSTMSSLLDCGFEFPMTETNPDCIAVCPSMAGFVSLTSGVLEFHPVVRKSQNAWDAKDILKMSSGIAYLFCSACYTNTIADELIALILNEFSKLDPELRYEIIVTTLKESHRSLNFTLDISKEQIDRLLVNPPMQKLLSLQYSLGKFLPTNQQSTIALAILNLRLISFSIMVTLRTLFHQQQRIVNKGVSESLIDGVYRSESVLSTVGTINWLIDFVIFTIQELMKLSQSSGHESIIVTLLLSTVPRSLLIYSLAGVKKIDGVLTKVMEQHMQTPRPSSLNVEILQKSAERFKSLLELVELEHFEKFLMQIETLIPQEKENRLSVEQAMVFECKLTGNFAGLDSRLLSLFQQHYEEHPLSELFFHDTRWLKLDVAPNTIPSKVLLSNDDPVPIVIDLSTDLIDDVTKMVITNKEKLKRCLRCEYIRGDNDDVFYIMGKGITGSTNHWPVAYNRTCLCGSCWAYLSGDECSL |
Length | 853 |
Position | Tail |
Organism | Cyberlindnera jadinii (strain ATCC 18201 / CBS 1600 / CCRC 20928 / JCM 3617 / NBRC 0987 / NRRL Y-1542) (Torula yeast) (Candida utilis) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Phaffomycetaceae> Cyberlindnera.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.074 |
Instability index | 34.79 |
Isoelectric point | 6.11 |
Molecular weight | 96191.75 |
Publications | PubMed=26150016
PubMed=27535936
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP10212
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 136.28| 45| 54| 242| 293| 2
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242- 288 (73.55/53.98) VSWNLKSCEPN................FKVEKLLMERLNKI...GSNGLTMELDQIEVisPNYSMD
295- 358 (62.73/31.40) IAFKGIGCNNRtllqkyqistvykdlrFKTDGGTVEGFPNLvlkAEDYLDGELLDIEL..KNFDMN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 234.72| 59| 132| 459| 517| 3
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459- 517 (97.38/62.45) NTIADELIALILNEFSKLDPELRYEIIVTTLKES..HRS.LNFTLDISKEQID...R...LL...VNPPMQ
536- 592 (62.76/37.72) STIALAILNLRLISFSIM.VTLR.....TLFHQQ..QRI.VN..KGVSESLIDgvyRsesVL...STVGTI
593- 655 (74.58/46.16) NWLID.FVIFTIQELMKLSQSSGHESIIVTLLLStvPRSlLIYSLAGVK.KID...G...VLtkvMEQHMQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 68.80| 21| 48| 166| 188| 4
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166- 188 (32.23/32.11) GFLHpNGK..SGCFIARrDGSVDFY
216- 238 (36.57/24.26) GFLR.DGDvvVVCYCPK.DQSLKVY
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