<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10204
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MASEASTVSLNGLVTFCVNKHASPVVFHSLLKQLVHKQEVKVEEVVALLESKEEIDPTVVMFIAGACLGEQVGNFKLATVLSNLESALGANQEIILTALITQLRHTPKIPFNSQELSDSVNALVDYLRYLLNHKSSNDLLMGAAGRFIVLFGGSVPHDLTLAPLSEEQSNTLKSFVMAIQDKIPEVTDDLTEFTEKFMRKNSVNIRQSVSLTSPHSSTSHISFMKTNKLPKVLWLNYALEHWKTHLPTFLVSFDHFVRVKTNQNVLNELLTTAFEGYAIEQQDKKGSQYFAKNWELFLLKRVPVLIRELKLKSTESSLVSALSVILAKASQAIKLQANGNASGEDMFASFPSTVTDVRHEFVKSCIALQLLPRSAFNTILKQDAAAYSGTIPTTDDILDSMGEPVDIKAKFNHTVVEVNPEFTSLEDSGLLEFLQSVEGMEGTKQIQIADLILSSIQEFIKAEDSAHLYRLCLGLSLSVNSLHAIVFHLSPYAILRPIMACLDKWQMSTEETNFQENHSEFGGILLFFMLIVQKFSVSVVDLVSLKTNVESESFCINYLTTLGSSSRRNPSLELNQHKSEVITAWISALFDSGGISDDLMRLSNVQECFELFPIIFQQALIAVKQNLTDVETVKGGLEYFLQPSLLATVVGIVSWCEDYLWRAEDVDLIVSLLKVLVCPTELSGESVHIHRIILSIFGPRLHKCLSTIDSSPTIPSKIDPVFLSSLHTSIKDSDRLEFFEVGTSRTLDALFSESQTNSHASLMHVFGTRFHALLSWGQSPVLPLYDHMFLPNMITFFGIGTVIDYLLSQVQAAQVSASKNSDLVIEVAVFILVAPYVGFSSHDKNVVLATLKSQSLVPYTYKTTPQLHELLQELLRRKEHYEEGTLQYETFDCFLKKILETTESIHPLE |
Length | 909 |
Position | Tail |
Organism | Cyberlindnera jadinii (strain ATCC 18201 / CBS 1600 / CCRC 20928 / JCM 3617 / NBRC 0987 / NRRL Y-1542) (Torula yeast) (Candida utilis) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Phaffomycetaceae> Cyberlindnera.
|
Aromaticity | 0.08 |
Grand average of hydropathy | 0.111 |
Instability index | 46.63 |
Isoelectric point | 5.43 |
Molecular weight | 101382.27 |
Publications | PubMed=27535936
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP10204
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 153.96| 45| 70| 682| 728| 1
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682- 728 (72.93/53.10) LSGES.VHIHRIILSIFGPRLHKCLStIDSSPTIPsKIDPVFLSSLHT
750- 795 (81.02/50.24) LFSESqTNSHASLMHVFGTRFHALLS.WGQSPVLP.LYDHMFLPNMIT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 107.92| 35| 70| 325| 364| 3
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325- 361 (56.41/51.52) IL....AKASQAIK.....LQANGNASgeDMFASFPSTVTDVRHEF
379- 422 (51.51/31.62) ILkqdaAAYSGTIPttddiLDSMGEPV..DIKAKFNHTVVEVNPEF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 212.21| 66| 71| 108| 175| 6
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65- 125 (41.18/24.76) .................GAClgeqvGNFKL.....ATVLSNLESA.LGANQEIILTALitqlrhtpKIPFNsqELSDSVNALVD
126- 195 (98.95/56.50) YLR.YLLNHKSSNDLLMGAA.....GRFIVLF..GGSVPHDLTLAPLSEEQSNTLKSF..vmaiqdKIP....EVTDDLTEFTE
197- 254 (72.08/38.77) FMRkNSVNIRQSVSLTSPHS.....STSHISFmkTNKLPKVLWLNYALEHWKTHLPTF........LVSFD.............
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