<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10201

Description Uncharacterized protein
SequenceMNQKRSETLIKKVETNTELLISRMQTIIALSASTSAQEIQASEMLQIESNASMIVRLVEELLSISRNLKESWILGQLPKSEQQQDVVTQEAQGKVDALLQKILQSKHYNEEIGLDEEFEKEEQEEDTGIKIEQEEKIPDELILPVETDSSVVKQEPPEAAPHTDEIKQEQKEKEEEKLDADEDLIMKDGLPVDTSQLVDPMDMSDGGATNVLGDYDFDNFGNMDRDDDIMMG
Length232
PositionHead
OrganismCyberlindnera jadinii (strain ATCC 18201 / CBS 1600 / CCRC 20928 / JCM 3617 / NBRC 0987 / NRRL Y-1542) (Torula yeast) (Candida utilis)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Phaffomycetaceae> Cyberlindnera.
Aromaticity0.03
Grand average of hydropathy-0.712
Instability index61.68
Isoelectric point4.17
Molecular weight26224.89
Publications
PubMed=27535936

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10201
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     118.98|      37|      44|     120|     158|       1
---------------------------------------------------------------------------
   79-  105 (27.97/ 9.90)	..............KSEQQQDV.VTQEAQGKV.DALL....QKILQS...
  106-  151 (49.85/24.49)	KHYNEEigldeefeKEEQEEDTGIKIEQEEKIpDELI....LPVETDSSV
  153-  197 (41.16/18.88)	KQEPPEaaphtdeiKQEQKEKEEEKLDADE....DLImkdgLPVDT.SQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.92|      12|      42|       9|      23|       2
---------------------------------------------------------------------------
    9-   23 (15.02/18.15)	LIKKVEtntELL.ISR
   54-   66 (15.90/ 8.99)	IVRLVE...ELLsISR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10201 with Med22 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EEIGLDEEFEKEEQEEDTGIKIEQEEKIPDELILPVETDSSVVKQEPPEAAPHTDEIKQEQKEKEEEKLDADEDLIMKDGLPVDTSQLVDPMDMSDGGATNVLGDYDFDNFGNMDRDDDIMMG
110
232










Molecular Recognition Features






MoRF SequenceStartStop




1) GGATNVLGDYDFDNFGNMDRDDDIMMG
206
232