<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10199
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MRNENITWSKNGFIAYMAPTHNSKYNLFLTYLENIDGRTWQLAKPQGLSMKPNDDCELPHLSSIFWSNLSTDLAVCDDHGNFYILLAGVGLLGQNGEGKPTENGKKNSPSSNGNFPSYELTSYNHTEMIYRDIISPNLTGNSVTRSKFVAFKWLNIEKTQIINKPATFVNTDPQQSQQMPQAPLAYSYGVTQYQPYGACHPISTKQACVALRQNGEFILYFQGEHKVEYHKVSVPVLNKKIVSFTRASIGFDSKRIIATAYDSILDTIFSFLVDIEWGFLIESSKKQKVDPHYYTPKELQTPPKLNLRVFHQMRPRPLLEIEVQSVKNEDAMDIDDNDKNNDETRTTLSNLSSINIISTNFEEENQLMVFISYETLDEITLQKLTTIYRYSITKALDLISSAFVDLGLRKNISKPNGAITYELSLQDKLTRPNLIQSIDTAVAETFIIITYEDGQIDLMDRKTLSLVSNNQENKNSTPPTITTLFDVGFQFPKIERTSKNPLRVSVSPNLTSLVYTEVNNETQQLTLKVLEKRPECEISPKELFITSVGFAFRHAYSCYTNTCADDLVALIQTEIKRIGNSLAKAVATKESNLELILNRFIESIICESHKAINFQLDAFGKDSVDKLLSNPPLQKLLSLQLVLGELQQNSNHVISDLAWIVLNLRSTSFGIMFSLSSIYRQISKKKPAEDSLQDSITRAECIMSLVGNVKWLIDLMIYLNQELLQLAFVKNTNSTDTKLHYKNSIVLPIILSKVPRLFLMYAWSSIGKTHEILKKLHKDLSESNKLFTPMKEALNRYFTVCNTSPLNLSISENFLRECDAYVSKEIASRAANKDRGYALKIEQKLVCQGELSDDLVQIAKLLIERHSINISRDIKVSELFFYDVNWIDVGIAKNTMSRIENEDFFRSKNPVIHIDPKDQRTTIPRLQYNRIECIDALRKVVVKVGDKLNPNLATVIPKKNNNNKLAKLRKCTRCRSVSSVTDPLVFDVPSNVGLWTMVFQRTCICGSAWVNCEK |
Length | 1014 |
Position | Tail |
Organism | Hyphopichia burtonii NRRL Y-1933 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Debaryomycetaceae> Hyphopichia.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.271 |
Instability index | 43.81 |
Isoelectric point | 8.30 |
Molecular weight | 115184.69 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP10199
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 228.40| 78| 120| 487| 577| 1
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487- 577 (112.73/141.25) VGFQFPKIERTSKNPLrVSvSPNLTSLVytevnneTQQLTLKVLEKRPECEISPKE.....LFITSVGFAFRHAySCYTNTC....ADDlvaLIQTEIKR
612- 698 (115.67/98.47) INFQLDAFGKDSVDKL.LS.NPPLQKLL.......SLQLVLGELQQNSNHVISDLAwivlnLRSTSFGIMFSLS.SIYRQISkkkpAED...SLQDSITR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 357.68| 114| 121| 44| 163| 2
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38- 157 (186.51/152.39) RTWQLAKPQG.LSMKPNDDCELPH..LSSIFWSNLSTDLAVCDDHGNFYILLA....GVGLLGQNGEGKpTENGKKNSPSSNGNFPSYELTSYNHTEmiyRDIISPNLtgNSVTRSKF...VAFKW.LNIE
158- 282 (171.17/120.25) KTQIINKPATfVNTDPQQSQQMPQapLAYSYGVTQYQPYGACHPISTKQACVAlrqnGEFILYFQGEHK.VEYHKVSVPVLNKKIVSFTRASIGFDS...KRIIATAY..DSILDTIFsflVDIEWgFLIE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 70.56| 22| 121| 330| 362| 3
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330- 351 (38.14/37.29) DAMD......IDDNDKNNDETRTTLSNL
457- 484 (32.43/11.98) DLMDrktlslVSNNQENKNSTPPTITTL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 60.55| 17| 29| 887| 914| 4
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890- 906 (29.91/35.46) GIAKNTMSRIENEDFFR
922- 938 (30.64/ 8.05) TIPRLQYNRIECIDALR
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