Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MLTESLNASRILTNFYKLGHLSNVSYTVYGQKASTELNDQSLLELELSIRYDHPRVLVTYYNKCLYQFVLTYENDTADSNGDQEWKNEDDQQNEQNQEPVQQSQQHNTNYTPPWDLSKEYPRLEVKFCNNVPVDYLSNPNSKSIDRKDEYLAYASLSFLKAIKKLVLYNLSLNNVAHLFGNHAVVNQNLSNSIIHIDPILLPNGDLLLSISTKRNLSLFNSSIVDHNDPMALDSNFIIYLIPSGIRCHLYDNVNKKQSFTYNPPKNCENLIKLIRLSTGVDLSNEKFLWVKLIPNLQHLNNQTSNISKFVHLVDNKKFILWPWKLCLLQFGYIEKQVYDNQNHLSQNQPFRSSSSDIDPLGLISDFMDFSISTHQSKSSSNNFTAPSASALSTGPNSTGPTNNETGSTVKNEDHLDMTNSMMNDIFDISMAPNESMNFFQNETKDTHQDQKGNHLNEGDQMIEENQEEQENQAKEEDQLDDLFGDDSSDEDQSQAAKPVEPQFDNNFDLQPSSQPIEVDEENKPIQADKDSTKELDLFYETQQDESKKDPEKDVEKEFKEPKPRSSTSASNSTYIDIPKDQMTIAPLRYLKTQTPQVYDDPGAPLPIVPTPIIPSSAPQSSGTIPDQKNSFNDLKNLNFYNNHLGHIGSSWTPSGAPEIDNKSVFSPLLFNPIIKSNIDTKYGKGGKFYVDKELSAGSDSESKKRKLRATSVSGYEYPAKKEDRGHSFDILNERGLGIIRSENQDRGIVSNEDNENAIADDDDPSDQSDDDEEEDDDDEESDEDEDINQNKVADHSKEQNSPPLKLNTDNDQGSSNQGNNLDTTQKQLNPSTLTNTGGFFSPLGQAAKYNTGSKFDSPLGMNSSFVDNNQMVTGSPSSIFDNKHLQPPPSAPVFQDDFQGHESFSPDDDSKKDQSPVSTGNTPAVSSPSKTVGISESSNCLPLILRGINVVSIPSLFLLNNISGSMNISTVTSDFNMDVDEEENDFEINQNNELVVKVNHLDEFLKWLGLNLVFDLGLNKYESNLRLSLPSNASKLTENDTFSSVDIGVPISQFESKFFKLFPLCYKVSLNEFINEISPQDPQDSTVQDELTNQLSFLDDIANDDILNPKSQLKKLNSIKWDSFYTVNQRNEENYRHYKEIIESFNKVNSYIKNDEDHLFQLLDNKARVLKNNDEIINLNSVGLRFWGYLNYSPLNGPKNFQVLLISERGQEENNCNSEFLNSLIYNYNEGHFGNITKLNLQSLDSKQDFESINDGLLLMNKGEDSVTSSYTDVYKKINKRLTSLVELIKLDLINKTNSFEFDRPLLLFFVDFDDNVNSMLQISKICRNFKLFLNQYQLPLVEIFTHVIPASFIFKQVANQKSVRYLSNYKLSRISMTLYNKCPDPFLGLKSLTNKQLTKSLFTNLVKSPPSKLQFKFLSNGGKESTSLAYNDDIFLHLAYERTVDKNWVSAAWSDPFGVTTHVKSWYCSPTNNKKHTKDIYEMGEVIDEIWNISNELFKTLNAEIIKKTSGLGGKKFLVLTRINNVIPDDELVHWKRLSMKYKDVSLIVLSVNRTPRVLFNVDFTSNRDVSPDDNDLVQDDASNASSNNNVGLSTAAATIAGSSNSTTGLNSSGNTVAGQAQPSSASGLLTGLNQQQQGQQNPSSNIVSGGQKNAAPTGMGSATTPSAPGSAPDFFKNFNNFPPSSNSSPTTTGATMITSPSHNGGINFHSPQQFLNAPGNFLSPQDLVGTGASGTANNVTTNGHSTVGAGVNSANGPGIIFNESDVVLHDRNSDITAVIPRTALPSFTSPSKLGMKIGYLLKECGNDSEEVGDGGSVKKYLVYETTILSCSNFWKLDAIMKIMLEQYKKLISLNDILGLTEIQTSTSSTKVDVTTDNFDQQEVDHKDAVLLVPWHINAVGKSLDYLIHVSVEE |
Length | 1915 |
Position | Kinase |
Organism | Hyphopichia burtonii NRRL Y-1933 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Debaryomycetaceae> Hyphopichia. |
Aromaticity | 0.08 |
Grand average of hydropathy | -0.604 |
Instability index | 39.18 |
Isoelectric point | 4.80 |
Molecular weight | 213946.38 |
Publications |
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP10182 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 50.53| 15| 15| 1589| 1603| 1 --------------------------------------------------------------------------- 1589- 1603 (24.72/16.00) NNNVGLSTAAATIAG 1606- 1620 (25.81/17.11) NSTTGLNSSGNTVAG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 108.32| 29| 30| 476| 504| 2 --------------------------------------------------------------------------- 476- 504 (48.20/22.16) EDQLDDLFGDDSSDEDQS.QAAKPVEPQFD 531- 558 (34.20/13.57) STKELDLFYETQQDESKK.DPEKDVEKEF. 775- 794 (25.91/ 8.49) DDD......DEESDEDEDiNQNK.VA...D --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 298.69| 93| 159| 115| 220| 3 --------------------------------------------------------------------------- 115- 220 (137.21/105.52) DLSKEyPRLEVKFCNNvpVDYLSNPNSkSIDrkdeylayaSLSFLKAIKKLVLYNLSLNNVAHLF........GNHAVVNQNLSNSIIHIDPILLPNGDLLLSISTKRNLSLFN 281- 381 (161.48/91.87) DLSNE.KFLWVKLIPN..LQHLNNQTS.NIS.........KFVHLVDNKKFILWPWKLCLLQFGYiekqvydnQNHLSQNQPFRSSSSDIDPLGLISDFMDFSISTHQSKSSSN --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 70.76| 16| 16| 1657| 1672| 4 --------------------------------------------------------------------------- 1657- 1672 (27.61/11.52) APTGMGS.A..TTPSAPGS 1673- 1689 (21.66/ 7.27) APDFFKNfN..NFPPSSNS 1690- 1707 (21.49/ 7.15) SPTTTGA.TmiTSPSHNGG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 153.05| 52| 159| 839| 898| 5 --------------------------------------------------------------------------- 389- 430 (45.70/19.72) .................SALSTGpnSTGPTNNE..TG..STVKNEDHLDMTNSmmNDIFDISM 439- 466 (29.33/10.30) FQ...NETKDTHQDQKGNHLNEG..DQMIEENQ.............................. 840- 898 (78.01/65.43) FSplgQAAKYNTGSKFDSPLGMN..SSFVDNNQmvTGspSSIFDNKHLQPPPS..APVFQDDF --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 44.86| 13| 16| 1621| 1633| 6 --------------------------------------------------------------------------- 1621- 1633 (21.72/12.12) QAQPSSASGLLTG 1639- 1651 (23.14/13.50) QGQQNPSSNIVSG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 128.74| 35| 38| 1168| 1204| 7 --------------------------------------------------------------------------- 1140- 1163 (26.37/ 8.99) .......EIIeSFNKVN.......SYIK...NDEDH.LFQLL 1168- 1204 (56.11/35.35) RVLKNNdEII.NLNSVGLRFWGYlNYSP...LNGPK.NFQVL 1209- 1244 (46.26/21.58) RGQEEN.....NCNSEFLNSLIY.NYNEghfGNITKlNLQSL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 74.75| 15| 16| 742| 756| 8 --------------------------------------------------------------------------- 95- 109 (25.22/10.81) QNQEPVQQSQQHNTN 742- 756 (25.41/10.95) ENQDRGIVSNEDNEN 760- 774 (24.12/10.00) DDDDPSDQSDDDEEE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 39.18| 11| 15| 1094| 1104| 9 --------------------------------------------------------------------------- 1094- 1104 (19.08/10.54) QLSFLDDIAND 1112- 1122 (20.10/11.53) QLKKLNSIKWD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 98.91| 29| 49| 561| 590| 11 --------------------------------------------------------------------------- 561- 590 (47.12/24.07) PKPRSSTSASNSTYiDIPKDQMTIAPLRYL 609- 637 (51.78/23.28) PTPIIPSSAPQSSG.TIPDQKNSFNDLKNL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 44.38| 12| 16| 651| 662| 13 --------------------------------------------------------------------------- 651- 662 (23.36/16.80) WTPSGAPEIDNK 670- 681 (21.02/14.12) FNPIIKSNIDTK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 48.93| 15| 16| 941| 955| 14 --------------------------------------------------------------------------- 941- 955 (24.51/17.31) LPLILRGINVVSIPS 959- 973 (24.42/17.21) LNNISGSMNISTVTS --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) ELDLFYE 2) IAPLRY 3) KFYVDKEL 4) TYIDIPK | 534 584 687 573 | 540 589 694 579 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab