<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10171
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MADMYSAHVTTGNPSKTHSPSNLRPLFFLIMTDPNLRMLASAAIQKRISPLAFLQLFHQLNAKHPVSAADYADFLRATDGDEGLRARYVLALALHSYGTCGNLLDMLRSLARSPPVTQTLVLTGLLRRFADAGLGTVYAAGDVMAALAGYLETADEAVLGVCANFLLALHAMLDERAGPFPDATARLCDAVARVSSALRTRDPHTARILTAKYAALQQSAQSSYSTQGSLKSAVPKAPTSSSANSAAKARRLLWLSPMVHQWQTAAKNFLVAFENALKIQSPFLLVTELVAAAFDGYAITRLSNRTTLATLAEQNWRLFVTKKLPLLIRELGIHGAETTIVGTLAALDPKVVKVLKKAADANDDFMNLNTDDSLLDDDEFNSFPSTSRDIRHDFVVACAQLGLMLRDVFRRLAQEKHLDVALDDDNWSASPPMDLAAEFARTLNVNAELVSFEDSMLTEFLQGIPRAPLGTQNEFVEVLLTTIGQLVKDSSLVALHRLCLGLATVPEVLDIVVALQSPRALLVPLVRVVDSWNADAEDMNFQDTYTDFGCVLLLVIFVCKRYQTSPSDDSSEGGGVSLVIGLDDGSSLTDVSDGSHTAGFTRDYLANLGAARYASLCDVPVPLSDISSDDKLNELLGGWIAALFESGAISDDLMGQTTAKECYELIPLLFQQAVSACERQIIDLEVLKSGLEYFLQPFLLVTIIGIFRLLRHAFWALASPGANDDARAQLLLSIVGILSSEDELAGESKLVHKVVLQIVGTDLAAALTEFKTAQPLLIAECSPLIERLSLDGNPHQTRSYLMEYLGQSTSVNTPIYMLGTQFHQLLGWCLTNHSLPAFDPSLVPLLADTVGYEKVLLYFLKQMDHVCASENLLVGNKNLMLVVNLAVSYVLSYSGICINKVTRESWLQFLKHGDGSGDALFTAFASLKSRLDATDSEIVALFIEKLTDAVEHAIPVN |
Length | 957 |
Position | Tail |
Organism | Babjeviella inositovora NRRL Y-12698 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Debaryomycetaceae> Babjeviella.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.191 |
Instability index | 37.35 |
Isoelectric point | 5.05 |
Molecular weight | 104013.08 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP10171
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 101.04| 30| 44| 363| 394| 1
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363- 394 (51.08/34.48) DDFMNLNTDDSL...LDDDEFNSFPstSRDIRHDF
407- 439 (49.96/28.03) DVFRRLAQEKHLdvaLDDDNWSASP..PMDLAAEF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 40.78| 11| 24| 564| 574| 3
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564- 574 (20.51/10.89) TSPSDDSSEGG
589- 599 (20.28/10.69) TDVSDGSHTAG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 55.76| 16| 24| 603| 626| 4
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603- 618 (27.97/30.53) DYLANLGAARYASLCD
630- 645 (27.79/10.32) DKLNELLGGWIAALFE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 108.68| 33| 233| 206| 238| 6
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163- 195 (55.50/37.64) ANFLLALHAMLDERAGPFPDATARLCDAVARVS
206- 238 (53.19/35.74) ARILTAKYAALQQSAQSSYSTQGSLKSAVPKAP
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