<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10142

Description Uncharacterized protein
SequenceMSLNGAVNGSNIGAPGMAWQKEITTDERKRLVMILINAIKNIGPNYPYERIVESAKNYEQLIYTRSQSKPGGIGADYITQCQSKIKSISEAIQNQRRQQAVSGNTLLNGGPNMAVNLQNQSTVHDHSEMAGQHMNNSSSIGNPNANATNQSTNSISNNQGQMQQPPAGLNNLTPQQQQMMQNAIKFRNAQQAAAAATATANNGPASSVEAKSGMNGIGDNGEVNVPTTAQFQQLQMNNNSNGNLMNNNGHQQSPRQLSQQQLARQQQQIQQQHLQHQQQLRQNQQSNPQIQQPQVQQHLQNQQQQQQGQQPPQLSKNVPAFAGSSQLPGQTQYQNQNRTQSPAQLAGPVPVQSLSQVQAQGLQMNQRLSNNGQNQDFSSVQNVVPSQARVLSSTEIGNPSIDANRPNNVSPRLDIKTMQIPAAILAKIPNLPTGVNTWLQISELLKNGTIPRTLTDTVRQAHSLHLQWITHVQKQRQQQLQQQNQQQQQQQQQQNQQQQQNQQQQQQQQQQLLLQQQQQQHTPQQQRQHLQQQQQQQQLQQHQQQQHQQHQQHQQQQQLQLQQQHQQQQQHQQQHQQQQLQQQQLQQQQPHHQQHQQQHQAQHQAQHQAQHQLQQLQQQHSQQLQQQHSQQAVQPIGINQPQAPTQVRRGQSISQQSNGRQHGTTLLRSPAIQSPVIQQPAIGPQPTQNHLQAPMPMPSQGHQQQQVHVVPRSQQAQIQTPNQANISASVNQSGQALSSLQPRDDDKRKLAEVIAEASKNPARLNNLTDQLADEDKRYVQTTVRASLPLYQRVDQLLPMFYYITKNSASTKRLVQLKLMFKEQIDGLAKGIFYMTPQMLDKAKFEFQRYFLFVRDNVQQSQRNNGSGPTVATTNIPLTGTAPNNVAVPPDRPHVAVPSPIVQNIQNPNLPKQPSGRNEFFNQQVPIVGPNGVPIPGSNQPSQPGLLQQPDILGQRGIQNQLGPGIVVVPNSVQAATIAGRQQPPQQQQQQILQQQQQQQQQQQLQQQQQQLQQQQQQQQLQQQQQQQLQQQQRFPPQTQFGQSAFVPTPQQQSQQQIHLQQAQNQPQQIQLQQQVQQRPPQQPHLPVQTSPSLARPLPQNTQVQKRTVNNSETATAGRKDLPVGASVVAPPHISPVSVTQPTAPISGGVPASSNRRKASVTKTASMGNMPLAAQQAQIPANSVSASRTYNSSITPQQAGQKQFSGRLGAMSPSGVPTYAKPGLTTEQLKMPVNRKRKASNSVSVSSTASPEDRNNQLLGSGVSDAKKERLEMVANNLNSGAEAGDYISFEMVQSKRALAESNPLVYFITSLGEALDISAEEIKRASQDTKPGKNDSAASKINSNNSSKTIKQKDVTPGALLRTPQPFMSGAKDTNSVGSTSFVDDTQGSFAESSMTTPQPSAASSVSSSAMSGVSTKKVLTPWTGSVSPVMMKNAFSSIEAVKLCNIQFLTPPTEDDDENHANIKIFDDVDKMKSMVAVKLGDNQKARKEGNESSDKNSEYVLSMPVNMAGKPLLIAGINDDEAANDGGAFAAGIDLWNNENIINNFEKEDLVLEREFWTL
Length1561
PositionTail
OrganismNadsonia fulvescens var. elongata DSM 6958
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetales incertae sedis> Nadsonia.
Aromaticity0.03
Grand average of hydropathy-0.940
Instability index67.24
Isoelectric point9.74
Molecular weight172857.56
Publications
PubMed=27535936

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10142
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     347.81|      23|      23|     555|     577|       1
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  482-  500 (41.39/ 7.86)	QQNQQQQ..QQQQ.Q...QNQQQ.QQ
  501-  524 (42.52/ 8.33)	NQQQQQQ..QQQQLLLQQQQQQHtPQ
  525-  546 (40.37/ 7.43)	QQRQHLQ.qQQQQQQLQQ.H.QQ.QQ
  547-  570 (47.58/10.45)	H.QQHQQhqQQQQLQLQQQHQQQ.QQ
  571-  590 (46.37/ 9.95)	HQQQH....QQQQLQ.QQQLQQQ.QP
  980- 1001 (47.41/10.38)	RQQPPQQ..QQQQI.LQQQQQQQ.QQ
 1002- 1021 (42.72/ 8.42)	QQLQ..Q..QQQQLQ.QQQQQQQ.LQ
 1058- 1080 (39.44/ 7.04)	HLQQAQN..QPQQIQLQQQVQQR.PP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     125.86|      26|      28|     265|     290|       2
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  251-  276 (40.59/ 8.03)	QQSPRQLSQQQLARQQQQ...IQQQHLQH
  277-  301 (49.24/11.77)	QQQLRQNQQSNPQIQQPQ...V.QQHLQN
 1025- 1052 (36.04/ 6.07)	QQQLQQQQRFPPQTQFGQsafVPT.PQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.18|      20|      28|     888|     915|       3
---------------------------------------------------------------------------
  616-  638 (22.90/ 6.42)	LQQQHSQQLQQQHS......QQAVqpiGI
  901-  926 (31.28/ 8.68)	VQNIQNPNLPKQPSgrneffNQQV...PI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.26|      25|      28|     724|     748|       5
---------------------------------------------------------------------------
  724-  748 (40.86/22.66)	ANISASVNQSGQALSSL..QPRDDDKR
  751-  777 (33.94/17.40)	AEVIAEASKNPARLNNLtdQLADEDKR
  781-  798 (21.46/ 7.92)	TTVRASLPLY.QRVDQL..LP......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.05|      23|      27|    1397|    1422|       6
---------------------------------------------------------------------------
 1397- 1422 (33.26/30.27)	TP..QPSAASSVSSSAMSGVstkKVLTP
 1428- 1452 (35.78/23.48)	SPvmMKNAFSSIEAVKLCNI...QFLTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.51|      27|      27|    1170|    1196|       7
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 1154- 1179 (37.24/17.46)	.NRRKASVTKTASMGNMP.LAAQQAQ....IP
 1180- 1208 (36.34/16.85)	ANSVSASRTYNSSITPQQ...AGQKQfsgrLG
 1209- 1231 (31.93/13.81)	AMSPSGVPTYAKP.....gLTTEQLK....MP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.38|      16|      27|     668|     694|       8
---------------------------------------------------------------------------
  676-  696 (15.15/ 7.99)	ViqqPAIGPQPTQNHLqAP........mP
  697-  721 (24.22/11.99)	M...PSQGHQQQQVHV.VPrsqqaqiqtP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     144.05|      27|      27|     116|     142|       9
---------------------------------------------------------------------------
   65-   92 (29.55/11.34)	RSQSK...PGGI.GA.........dyITQC......................QSKIKSISE.AI
   93-  131 (31.12/12.47)	QNQRR...QQAVsGNtllnggpnmavNLQN......................QSTVHDHSEMAG
  132-  160 (36.88/16.61)	QHMNN...SSSI.GN........pnaNATN......................QST.NSISNNQG
  161-  216 (22.46/ 6.24)	QMQQP...PAGL.NN....ltpqqqqMMQNaikfrnaqqaaaaatatanngpASSVEAKSGMNG
  334-  359 (24.04/ 7.38)	QNQNRtqsPAQLaGP............VP..........................VQSLSQVQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     121.76|      29|      29|    1275|    1303|      10
---------------------------------------------------------------------------
 1275- 1303 (47.65/30.50)	NNLNSGAEAGDYISFEMVQSKRALAESNP
 1306- 1331 (36.32/21.29)	YFITSLGEALD.ISAEEI..KRASQDTKP
 1339- 1366 (37.80/22.49)	SKINSN.NSSKTIKQKDVTPGALLRTPQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.47|      18|      29|     404|     421|      11
---------------------------------------------------------------------------
  366-  385 (22.52/ 9.61)	QRLSNNGQNQDF....SSVQnvVP
  404-  421 (32.51/18.10)	NRPNNVSPRLDI....KTMQ..IP
  430-  451 (24.44/11.24)	NLPTGVNTWLQIsellKNGT..IP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.46|      18|      29|       1|      21|      12
---------------------------------------------------------------------------
    1-   21 (25.34/26.32)	MSLNGAVngSNIGaPGMAWQK
   33-   50 (34.12/21.10)	MILINAI..KNIG.PNYPYER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.44|      41|     243|     856|     900|      13
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  856-  900 (65.39/46.05)	NVQQSQRNNGSGPTVATTNIPLtGTapnNVAVPPDRPHVAV..P.SPI
 1102- 1145 (62.04/32.54)	QVQKRTVNNSETATAGRKDLPV.GA...SVVAPPHISPVSVtqPtAPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.64|      12|      31|     928|     939|      15
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  928-  939 (24.83/12.41)	GPNGVPIPGSNQ
  962-  973 (22.81/10.79)	GPGIVVVPNSVQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10142 with Med15 domain of Kingdom Fungi
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