Description | Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MSVGYSSMKHSRSDHKISWSKNGFIAYSDPTSTSNLSITKLESIRGSTWRLAPKKIFQIKTNPNSRLSSITNVYWSTSGMDLAIIDELGNITILSTGVLKNTSSHQLSCFEDVDIIYQDETCERLNTSKQSRISTGDSTTKVIAFKWLNVDKPIISNSPAVRVLTSSDSMVSSGAAADGAAASSDSSGYAYSYAVHQYKSYGTLHPIQGKSGFFTVRRNGEVDFHYQLNNAGFDFKKTTVLLEDVSDLKTLWLEHASIGFNRDGSVIVACFSKLTKSLRVYKIVVNWGEINPNDKLKAPLTLSVEKLISEPLSVIGSNGFPQELSGIDIISPNFSLDTELELLLTFEGPGVTGGETLLQKFQISNEYKNLRFKNESNGYSNGASTSVDNYYTLVQTGETILDNRVLDISFKNFDFMIVLTLRNGEIQLRNRKNLHIIGNGGQKEVIPSAISTLLDAGFKFELPESVPEAISVSPNLCGFVAMNKNNTLEYKATTRPQHEMKKGEILTLSAAFGCKYSSACFTNMSSDDLIIAIQDEILKIPDPNIKDQLILAILQESHRALNFSLDHSKDQIDRLLVNPPIQKLLSLQYSLGKLQPTNETSSIALAILNLRLVAFSIMLSLRTLFHHQQRVTKKGSETLMDAIYRSENILSTLGTINWFIEFLIFTIQELMSCCDVNTSNKDHFDTIVFALLLSKIPRSLIIYSIAGIKRIDGFLQKIQELNNANSPGALNMEILNKSVERYKFLLSLIDLERYEKFLIDIESIFQRNLEKSAALSIEQTLIFQNKIPSSYLGSIGVILNKFQEQFQDTSNLAELYFHDTRWLHFQISNNPKVSKILLKPTDKVPILFNLNDTLIDDVTKVVITNKEKLKKCLRCEYITANDTEGFFSSAIKGGANSNANLNHWPVAFHRTCLCGSCWVYIDHSEVTGF |
Length | 929 |
Position | Tail |
Organism | Wickerhamomyces anomalus (strain ATCC 58044 / CBS 1984 / NCYC 433 / NRRL Y-366-8) (Yeast) (Hansenula anomala) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Phaffomycetaceae> Wickerhamomyces. |
Aromaticity | 0.09 |
Grand average of hydropathy | -0.132 |
Instability index | 32.47 |
Isoelectric point | 6.70 |
Molecular weight | 103846.30 |
Publications | PubMed=27535936 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | |
GO - Biological Process |
Binary Interactions |
Repeats | >MDP10135 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 336.83| 116| 200| 173| 303| 1 --------------------------------------------------------------------------- 173- 303 (173.94/161.75) SGAAADGAAASSDSsgyaYSYAVHQYKSY..GTLHPIQGKS.GFFTV..RRNGEVDFHYQ..LNNAGFDFKKTTVlledVSDLKTLwLEhASIGFNRDGSVIVA.......C.FSKLTKSLRV.YKIVVnwgeiNPNDKLKAP..LTLS 376- 509 (162.89/111.15) SNGYSNGASTSVDN....YYTLVQTGETIldNRVLDISFKNfDFMIVltLRNGEIQLRNRknLHIIGNGGQKEVI....PSAISTL.LD.AGFKFELPESVPEAisvspnlCgFVAMNKNNTLeYKATT.....RPQHEMKKGeiLTLS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 63.26| 20| 20| 529| 548| 3 --------------------------------------------------------------------------- 529- 548 (34.85/23.01) LIIAIQDE...ILKIPDPNIKDQ 549- 571 (28.41/17.42) LILAILQEshrALNFSLDHSKDQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 129.55| 42| 199| 580| 680| 4 --------------------------------------------------------------------------- 580- 621 (66.81/107.96) PIQKLLSLQYSLGKLQPTNETSS...IALAILNLRLVAFSIMLSL 704- 748 (62.74/15.57) SIAGIKRIDGFLQKIQELNNANSpgaLNMEILNKSVERYKFLLSL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 99.35| 32| 35| 103| 134| 5 --------------------------------------------------------------------------- 103- 134 (56.26/35.56) SSHQLSCFE..DVD.IIYQDETCERLNTSKQSRIS 138- 172 (43.09/25.63) STTKVIAFKwlNVDkPIISNSPAVRVLTSSDSMVS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 37.40| 10| 23| 40| 49| 7 --------------------------------------------------------------------------- 40- 49 (18.48/12.63) KLESIRGSTW 66- 75 (18.92/13.13) RLSSITNVYW --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 53.74| 14| 462| 355| 368| 9 --------------------------------------------------------------------------- 355- 368 (25.09/14.45) ETLLQKFQISNEYK 819- 832 (28.64/17.46) DTRWLHFQISNNPK --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) IRGSTWRLAPKKIF 2) WSKNGFIAY | 44 19 | 57 27 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab