<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10134

Description Uncharacterized protein
SequenceMNQKRSESFIKKVDTNTELLISRFTNIIGLSASTSSQEVQASEMLQIELHAQTMVRLIEELLSVSRTLKESWILGQLPESKDVKDPTIGITEKINNVLDKVLNSEKFEEEVEIDEEEVEIDEDEEIVDETEEVKEEPKQEVKDEVKKEETVKDEVTEDTEVKEEPKDVQVKEEKEETNGINEHNNENVNIPNDDVIDISDNPNFDELDFESFGNMDQNNDDNNDIIMID
Length229
PositionHead
OrganismWickerhamomyces anomalus (strain ATCC 58044 / CBS 1984 / NCYC 433 / NRRL Y-366-8) (Yeast) (Hansenula anomala)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Phaffomycetaceae> Wickerhamomyces.
Aromaticity0.03
Grand average of hydropathy-0.914
Instability index52.75
Isoelectric point4.10
Molecular weight26372.45
Publications
PubMed=27535936

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10134
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.39|      25|      26|     128|     153|       1
---------------------------------------------------------------------------
   85-  108 (33.78/11.19)	DPTIGITEKI.N.NVLDKVLNSEKFE
  128-  152 (42.55/16.63)	DETEEVKEEPKQ.EVKDEVKKEETVK
  156-  177 (26.06/ 7.40)	TEDTEVKEEPKDvQVKEE..KEET..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.64|      12|      27|     187|     198|       3
---------------------------------------------------------------------------
  187-  198 (22.16/10.63)	NVNIPNDDVIDI
  214-  225 (23.48/11.64)	NMDQNNDDNNDI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10134 with Med22 domain of Kingdom Fungi
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