<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10103

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMASSSHSPFDDLRVSLDPTTIDLALGQKRVKAIDHDGTIIYEDDESLETDLTSQLERIWNEYPNGLLDLSESKLASLPPDAIAFQSKPEDGEGEGGGGEGGKKKRDVFKMMEWDEMERLRSEMYMQLNDARNELWFALELVKTLSVSSAYTSQPPPPPTTLHQNQNQNQKKQPKPKPTPAPPVPPPTIPGEPPILPPGTYTTTPSSLPSVPLHSTVNDLIQLVHARDKAVGEALGLVDGAVEELELMGRAGDRFWRDVRGLREGKGGRGRWAIVPKPDFARPTPTKDGEKAKDVIIPYAIDEASPATRSRCIAGFDLDPTIPTSLSFPARGYRRVRVVVRDKAAGTVVSSGVEAEGKAGDVGEEMVRAQMEAFDEDLFTQIRIEASILDKSIIEPTQVQIQIPTSSHTLIFQLYSPPSAPSPSPSPSPSHSQTPTSPLCKLLLASARLNLLSGLRVQKQILVAPSPSLRTPSSSSSSPGGVIGSLVEGLEFKSLWEGVQSVVAFLGKALEGAGVEAEVGWEVVSAGKGNETGDRGIMSLLGQVLQGQKLGEGLKVVWSLSLGDSGTIKVSLSPPTSLLITLPSHNATPTPSNANANPSGPPPPGRPPSPSNANSDPTKSTSSFPLTNPEELSYILAGELERQLLAGIEGRLKARSLREFGGGKGKGKEVWWDKLVGVVQVGRRTLRVSLPPPYHTIYAFISSPPTPPSPPTPPARAVVGDDGGNDVGQDGTVVETEGKQEKEEEDSEEKKKKEGEEKYDSRDSEGGLWNWVDGLEL
Length776
PositionHead
OrganismCryptococcus amylolentus CBS 6039
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Tremellomycetes> Tremellales> Cryptococcaceae> Cryptococcus.
Aromaticity0.05
Grand average of hydropathy-0.478
Instability index53.79
Isoelectric point5.12
Molecular weight83323.76
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10103
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     288.41|     101|     135|     464|     575|       1
---------------------------------------------------------------------------
  351-  437 (82.34/35.42)	GVEA........EgkagdVGEEMVRAQM..EA.FDED...LFTQIRIeasilDKSIIEPTQVQIQIPTS.SHTLIFQLySPPSaPSPsPS............P..SPSHSqtPTSP....................................
  464-  512 (35.16/22.46)	....................................................................................PSP.SL............R..TPSSS..SSSPGGVIGS..LVEGLEFKSLWEGvqsvvaFLGKALEgA
  513-  599 (94.29/51.28)	GVEA........E.....VGWEVVSAGKGNET.GDRGimsLLGQVLQ.....GQKLGEGLKVVWSLSLGdSGTIKVSL.SPPT.......sllitlpshnatP..TPSNA..NANPSG..................................
  600-  645 (37.50/11.33)	....................................................................................PPP.PG............RppSPSNA..NSDPTKSTSSfpLTNPEELSYILAG......ELERQLL.A
  646-  693 (39.12/11.57)	GIEGrlkarslrE.....FGG...GKGKGKEVwWDK....LVGVVQV.....GRR.................TLRVSL.PPPY.....................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.46|      21|      24|     274|     297|       2
---------------------------------------------------------------------------
  153-  173 (38.60/13.30)	QPP.PPPTTLHQNQNQNQKKQP
  276-  297 (32.87/14.64)	KPDfARPTPTKDGEKAKDVIIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.77|      10|     168|      91|     100|       4
---------------------------------------------------------------------------
   91-  100 (20.68/11.03)	GEGEGGGGEG
  260-  269 (20.10/10.49)	GLREGKGGRG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10103 with Med17 domain of Kingdom Fungi
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