<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10036

Description U-box domain-containing protein 33
SequenceMRMVRAGAGSRAGAAASLASLRAHTPFSAEAEASPLPMEETAAPLPLTVRAAGAAPDGDERRQPQLEGGGHHQIQSQETEEEHAQAVYCAVGIGTGSGSQEWKDNLRWVLAALAPRRSSSRCLVLAHLRRPTSRINIMGAWVPVSQLAEEEVAAYRQLEEERIGKVLDDLVELCQSQKVNASKIVIASDDIGRGLVQLVDDHGVTELVMGAASDRAYSRKMRTPRSKKALTVQWKANPSCKIWFLCRGNLICTREASEGQAHSRAESSTASTSSRSSTSGYSTPAARDRSIEDQAVGTLDGAAVQLLQEIEEDRPETPTSDAGEMDDALYDKLKRALMEAESLKHEAYEETRRRQMAERELAEASRMVVVTKLHHFLPVKIHADDHIADEAERSNQREARHRKEVEEMVARERAAIEQDRRELDDILEKIRKVDDRSAELELQITSSERTMNDLEARLSESYNLLHTLRQGDPWSTATESASESTEDGGGEQRVSFLQLGYSELDEATKHFDESVRIDGGGDGSRGKVYGGELRGMAVAVKVVNPDVAVHEARFARAVERIGRARHPNLVTLVGACPAARAVVYELVPGGSLEERLDPGGGSGSAPPPLPWHARCGVAYGACSALAFLHSTLPRPTVHGDVRPANILVLADNAPHGWSCKLAGLGARGLVEEREQPRPGAADRAYADPRYLAATGELNPHRDVYALGVVLLRLVTGRPAFLARKAAREAVDGRASWQEVAGGWPTERAREVALLGLRCCGVDVEAEQRPRLPAALLLEEARGVLEAAVSAAPSRSPSSLSESDGAPSYFLCPILKEVMRDPQISGDGFTYEAEAIREWLRSGHDTSPMTNLKLPTQQLVPNHALRSAIHEWRHRQLRAHHRLH
Length883
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.04
Grand average of hydropathy-0.471
Instability index50.69
Isoelectric point5.95
Molecular weight96413.11
Publications
PubMed=19965430

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10036
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.50|      15|      33|     477|     491|       1
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  477-  491 (26.89/15.79)	ATESASESTE.DGGGE
  507-  522 (24.60/13.80)	ATKHFDESVRiDGGGD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     651.22|     211|     467|     179|     403|       2
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  179-  403 (316.84/208.38)	VNASKIVIASDDIGRGLVQLVDDHGVTELVM.......GAAsDRAYSrkmrTPRskkALTVQWKANPSCKIWFL..CRGNLICTREASEGQAHSRaESSTASTSSRSSTSGYSTPAARDRSIEDQAVGTLDGAAVQ........LLQE....IEEDRPETPTSDAGEMDDAlyDKLKRALMeAESLKhEAYEETRRRQMAERELAEASRMVVVTKlHHFLP...VKIHADDHIADEAERSNQREARHRK
  641-  875 (334.38/182.57)	VRPANILVLADNAPHGWSCKLAGLGARGLVEereqprpGAA.DRAYA....DPR...YLAATGELNPHRDVYALgvVLLRLVTGRPAFLARKAAR.EAVDGRASWQEVAGGWPTERAREVALLGLRCCGVDVEAEQrprlpaalLLEEargvLEAAVSAAPSRSPSSLSES..DGAPSYFL.CPILK.EVMRDPQISGDGFTYEAEAIREWLRSG.HDTSPmtnLKLPTQQLVPNHALRSAIHEWRHRQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.41|      22|     255|     149|     172|       3
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  149-  172 (32.01/28.11)	EEEVAAYR.QLEEERigKVLDDLVE
  406-  428 (33.40/21.63)	EEMVARERaAIEQDR..RELDDILE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.30|      47|     518|       9|      97|       5
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   43-   97 (72.34/97.53)	APLPLTVRAAGAAPDG.............DERRQPqleGGGHHqiQSQETEEEHAQavyCAVGIGTGS
  564-  623 (82.96/34.46)	ARHPNLVTLVGACPAAravvyelvpggslEERLDP...GGGSG..SAPPPLPWHAR...CGVAYGACS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10036 with Med32 domain of Kingdom Viridiplantae
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