<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10035

Description U-box domain-containing protein 33
SequenceMEEWEPLRSARCSPAATPSSLLQDELAAHEVFVAVPEEVSDGRSTLLWALRNLVKDGSKLAIAHVHYCPAPAIAQNRSHTSMKPEEIKEYRKQKRAKAEKSLDAYVQMAKAVTFQVACAKVIIETDDVAEGLEELISLNNVTEFVMGAAADRHFSREMNTPKSMTALKLFKTAAPSCKMWFTCKGHLICTREANESLPAILASPEKSNAPLSPAHNVSSQMGSMATELEYKESSHKGYISSSSAAAEMTEWDYLFGDWRMIVYGSSGTDDAVSFSETAALPSVIGDTHETTQVVHFTTQEPDSTYLLLASTYNQEDEPSVHEEKYEKLQDSCIEAKLLKDEADDDESNKIRKAEMDLLSALQRIKELEDSYIHEVSQRKEIEKTLARQRLEIDEMRRQRCTLSDKLHDSDKHKLVLEQRITQIKSAAKDHVEEITEHFIRQSSEESKKHQKVKMGLLSTLQRVKEVESLLQNEKAQREYMEEKVSRQRTEIEETRRQRDKLYHDLQDLKEQKLKLEQVGMSEETNRRRKAERDRLSYLQRIKDLEHQHIHQVKKQETMEETMTRQKEEIQASKRKLHETHGKHMSEIKSAVKVHEEKLADSKQLLQELQAKHDKLLRERDTAAMEAKESRQKNKQRALGTTETANTEFSIVELQKATRGFDAELKISEDGFASVYRGFVRNTDVAIKLFHSRSLKGQARFYQEVAVLSRVRHPNIVTLVGVCPDDFALVSEFLPNGSLEDWLSCKKSMPPLTWKARTRIVGEICSALAFIHSHKPYPIVHGDLNLGNILLDANFVSKLGGLGICCLLLGGGEDDITATSLRSRPSAADRSKGTLRYTEQGGGFKSAAELMLWSDVNSFGVTILRLLTGRSQQGIGEMVEEAMEKGNLHSIIDASAGEWPLVQASQMAHLLGLGASPWARGASQISPGRCGRRSSN
Length935
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.05
Grand average of hydropathy-0.591
Instability index54.03
Isoelectric point6.35
Molecular weight105365.19
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10035
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     249.83|      40|      40|     366|     405|       1
---------------------------------------------------------------------------
  362-  392 (39.59/23.32)	......QRI.......................K.........ELEDS.......YIHEVSQ...R.KE..IEKTLARQRLEI
  393-  454 (37.96/22.01)	DEMRR.QRCTLSDklhdsdkhklvleqritqiK.........SAAKD.......HVEEITEhfiR.QS..SEESKKHQKVKM
  455-  491 (38.71/22.62)	GLLSTlQRV................................kEVESL.......LQNEKAQ...R.EY..MEEKVSRQRTEI
  492-  537 (45.15/27.77)	EETRR.QRDKLYH...................DlqdlkeqklKLEQV.......GMSEETN...R.R.....RKAERDRLSY
  538-  569 (36.88/21.15)	..LQR...................................ikDLEHQ.......HIHQVKK...Q.ET..MEETMTRQKEEI
  570-  605 (23.62/10.54)	QASKR.K........................................lhethgkHMSEIKS...AvKV..HEEKLADSKQLL
  606-  632 (27.92/13.98)	QELQA.KHDKLL...............................R................E...R.DTaaMEAKESRQK...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.21|      13|      25|     218|     230|       4
---------------------------------------------------------------------------
  218-  230 (23.24/16.09)	SSQMGSMATELEY
  241-  253 (23.97/16.85)	SSSAAAEMTEWDY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10035 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KAQREYMEEKVSRQRTEIEETRRQRDKLYHDLQ
2) KLKLEQVGMSEETNRRRKAERDRLSYLQRIKDLEHQHIHQVKKQETMEETMTRQKEEIQASKRKLHETHGKHMSEIKSAVKV
474
512
506
593










Molecular Recognition Features






MoRF SequenceStartStop




NANANA