<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10034

Description U-box domain-containing protein 33
SequenceMEEWEPLRSARCSPAATPSSLLQDELAAHEVFVAVPEEVSDGRSTLLWALRNLVKDGSKLAIAHVHYCPAPAIAQTACDFRYISDRSHTSMKPEEIKEYRKQKRAKAEKSLDAYVQMAKAVTFQVACAKVIIETDDVAEGLEELISLNNVTEFVMGAAADRHFSREMNTPKSMTALKLFKTAAPSCKMWFTCKGHLICTREANESLPAILASPEKSNAPLSPAHNVSSQMGSMATELEYKESSHKGYISSSSAAAEMTEWDYLFGDWRMIVYGSSGTDDAVSFSETAALPSVIGDTHETTQVVHFTTQEPDSTYLLLASTYNQEDEPSVHEEKYEKLQDSCIEAKLLKDEADDDESNKIRKAEMDLLSALQRVQCDQNSEISLQIKELEDSYIHEVSQRKEIEKTLARQRLEIDEMRRQRCTLSDKLHDSDKHKLVLEQRITQIKSAAKDHVEEITEHFIRQSSEESKKHQKVKMGLLSTLQRVKEVESLLQNEKAQREYMEEKVSRQRTEIEETRRQRDKLYHDLQDLKEQKLKLEQVGMSEETNRRRKAERDRLSYLQRIKDLEHQHIHQVKKQETMEETMTRQKEEIQASKRKLHETHGKHMSEIKSAVKVHEEKLADSKQLLQELQAKHDKLLRERDTAAMEAKESRQKNKQRALGTTETANTEFSIVELQKATRGFDAELKISEDGFASVYRGFVRNTDVAIKLFHSRSLKGQARFYQEVAVLSRVRHPNIVTLVGVCPDDFALVSEFLPNGSLEDWLSCKKSMPPLTWKARTRIVGEICSALAFIHSHKPYPIVHGDLNLGNILLDANFVSKLGGLGICCLLLGGGEDDITATSLRSRPSAADRSKGTLRYTEQGGGFKSAAELMLWSDVNSFGVTILRLLTGRSQQGIGEMVEEAMEKGNLHSIIDASAGEWPLVQASQMAHLLGLGASPWARGASQISPGRCGRRSSN
Length956
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.05
Grand average of hydropathy-0.585
Instability index54.36
Isoelectric point6.21
Molecular weight107768.79
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10034
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     200.55|      35|      35|     338|     372|       1
---------------------------------------------------------------------------
  338-  372 (57.96/36.16)	Q.DSCIEAKL.LKDEADDDESNK.........I.RKAEMDLLSALQR
  374-  410 (36.95/20.26)	QcDQNSEISL.QIKELEDSYIHE.........VsQRKEIEKTLARQR
  418-  453 (23.45/10.04)	R.QRCT.....LSDKLHDSDKHKlvleqritqI.KSAAKDHVE....
  455-  483 (35.40/19.08)	.....ITEHF.IRQSS..EESKK.........H.QKVKMGLLSTLQR
  527-  561 (46.79/27.71)	Q.D.LKEQKLkLEQVGMSEETNR.........R.RKAERDRLSYLQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     136.30|      31|      65|     562|     592|       3
---------------------------------------------------------------------------
  497-  514 (19.88/ 8.34)	.............QR.EY..MEEKVSRQRTEIEE
  562-  592 (50.45/33.64)	IKDLEHQHIHQVKKQ.ET..MEETMTRQKEEIQA
  597-  627 (33.63/19.72)	LHETHGKHMSEIKSAvKV..HEEKLADSKQLLQ.
  629-  658 (32.34/18.65)	...LQAKHDKLLRER.DTaaMEAKESRQKNKQRA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.21|      13|      21|     227|     239|       6
---------------------------------------------------------------------------
  227-  239 (23.24/14.65)	SSQMGSMATELEY
  250-  262 (23.97/15.34)	SSSAAAEMTEWDY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10034 with Med32 domain of Kingdom Viridiplantae
Unable to open file!