<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10033

Description U-box domain-containing protein 33
SequenceMEGGSGAAHRPWDTASQLQYSFRTSVSSLSEVEEEEASPPPVAVEDRVFVAVPEDAKNGKSTLLWALENPAKDCAGVVVAHVHCPAQMIPMMGAKVHHSTVNPQRVNEYRKKVRAEVEEKLDEYVLVCRRQKVSCQKVVIEMDDAVRGLEQLITLHGVAKLVMGAAADKHYSKKMKSLKSKTALRLTEVAAPSCKIWFTCKGRLICTREANTTVPAMPPPSPALTSASRSSVSSVASQLRSMLLSRSESDGSSSNGSPRHDLTRSRTEAGLLLYPSHETVNIGTPSRLYESYGRRPPTTASVSSSDSWNEFGRRSQNSWHDDLSRNDGAATTTVVVSGSAMQEPDDENFSSPSHELENPGVDANIYRRLTEALSEAERCRKEAYQESAKRLRAELDMASALENVNELYQHEVRQRKAIEETLARQAQEMEEMKRQHGVASKELHDVKEQRLVLERQVTEMASAVQGYEEKVAAAETLNTAEFSYSELEQATQGFDEGLKIGEGGFGSVYRGFLRNTAVAVKLLDPESMQGPSEFNQEVAVLGRVRHPNLVTLIGACREALGLVYEYLPNGSLEDRLACTNDTPPLTWQVRTRIICEMCSALIFLHSNRPHPVVHGDLKPGNILLDANLVSKLGDFGICRLLMMSQSTTTTTMPVATTKLHRTTTPKGTFAYMDPEFLSTGELTPRSDVYSLGIIILRLLTGRPPKSIAEVVEDALERGQLHAVLDAAAGDWPFVQANQLAHIGLRCAEMSRRRRPDLAGEVWKVVAPLTMAAAGRPLPFAPSPLDDARAPSYFVCPIFQEVMSDPRIAADGFTYEAEAITGWFDSGRDTSPMTNLKLEHCELTPNRALRSAILEWRQQQQRR
Length862
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.398
Instability index51.65
Isoelectric point6.06
Molecular weight95193.73
Publications
PubMed=19965430

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10033
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     366.88|      98|     177|      98|     195|       2
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   98-  160 (84.02/50.18)	..................................................HSTVN...P.QRVNE.Y..RKKVRAEVE.EKLDEYV..LVCRRQKVSCQK....VVIE.MDDAVRGLEQL..IT...LHGVAK
  161-  237 (89.75/54.15)	LVMGAAAD...KHYSKKMKSLKSKTA.....LRLTEV..AAPSCK.........................................iwFTC.KGRLICTReantTVPA.MPPPSPALTSAsrSS...VSSVAS
  243-  340 (93.93/57.05)	LLSRSESDgssSNGSPRHDLTRSRTE.....AGL...........llypsHETVNigtP.SRLYEsYgrRPPTTASVS.SS.DSWN..EFGRRSQNSWH...........DDLSRNDGAA..TTtvvVSGSA.
  341-  439 (99.18/60.69)	..MQEPDD...ENFSSPSHELENPGVdaniyRRLTEAlsEAERCR..............kEAYQE.S..AKRLRAELDmASALENV..NELYQHEVRQRK....AIEEtLARQAQEMEEM..KR...QHGVA.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10033 with Med32 domain of Kingdom Viridiplantae
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