<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10018

Description Polymerase II transcription-mediator2
SequenceMKEIVQRQADEIQRSLKEKKVLATPRNPPTFEKEDSYQIAHDIVSGLVECIRQNGGANPDGDLSTVASAVSAIVANAGHVIAKHLDFAGGNYQGVNSVSNSLNFVRHTLRVHINSLCLLKETLGDRFSRAFEIALAVETSGAVTAAFASPKMHRNQFQPSPEAHDAYGNHTSDLSNSGKGFVGRTAKVSAAVSALVVGAVVHGAVSLERMVAALKIKDGLDILQLLRGLKSSSNGVSRPTGTFRIEHSTDVLVHWFRVLLGNCRTVYDGLIADILGDSYILALSRLQQMLPLSVIFPPAYSIFAMVLWRRYIFNREDPQLYQSLSNAISDITRHQPFREICFRNTHRLYNLLASDVGDSEFAAMLETHSPDRNSKILPFIPLRARLFLDALIDCNTPTIQGDGASEPCDPKDNELKLSERLMQLLDTLQPAKFHWQWVEMRLLLDEQALMEKVAAGKTALESLRSLSPKAEGFTLSDSEKGFTEVILSRLLARPDAAPLYSEAVRLLGKLQESLVMDVKWILQGQDAILGRRSTRQQLVHIAQRKGLSTKAQVWKPWGWSSLLSDVIPNKTAKRKLEVTSIEEGEVVDDTVDAKRPSKTPPHSVDRSFEAIRSINKYLTEKALAELVLPCIDRSSADIRGILSVDLIKQMGTISEHIKAIARNGAKQAGSVPSGNEVPSSKSSGRKGIRGGSPNIGRRAPVGNDPSPPSASALRAALWLRLQFIIRLLPVIMADR
Length735
PositionKinase
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.167
Instability index45.10
Isoelectric point9.20
Molecular weight80755.65
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10018
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.16|      24|      26|     662|     685|       1
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  662-  685 (43.11/23.77)	RNGAKQAG.SVPSGNE.VPSSKSSGR
  689-  714 (36.05/18.77)	RGGSPNIGrRAPVGNDpSPPSASALR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.16|      45|     304|     174|     221|       2
---------------------------------------------------------------------------
  174-  221 (66.35/53.13)	LSNSGKGF....VGR.TAKVSAAvsALVVGAV.VHGAVSlERMVAALK.IKDGLD
  475-  526 (58.81/37.04)	LSDSEKGFteviLSRlLARPDAA..PLYSEAVrLLGKLQ.ESLVMDVKwILQGQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.95|      21|      26|     594|     614|       3
---------------------------------------------------------------------------
  568-  587 (17.18/ 8.66)	..PNKTAKRKLEvTSIEEGEVV
  594-  614 (35.86/27.20)	KRPSKTPPHSVD.RSFEAIRSI
  621-  641 (30.91/22.29)	KALAELVLPCID.RSSADIRGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.43|      33|      79|     250|     283|       4
---------------------------------------------------------------------------
  250-  283 (55.07/38.56)	DVLVHWFR.............................VLLGNCRTVYDGLIADIlGDSYILAL
  303-  364 (45.36/26.97)	FAMVLWRRyifnredpqlyqslsnaisditrhqpfreICFRNTHRLYNLLASDV.GDSEFAAM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10018 with Med12 domain of Kingdom Viridiplantae
Unable to open file!