<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10016

Description Polymerase II transcription-mediator2
SequenceMKTEASPAAGDIEEPLVHFKWRYMVRLIQWHLTEELLVPSVLIEWLSNQLQERDSVDVLELLLPIMLGLVDTITLSQTYVRMFVELLVRRLNDASVVDSPKGPSVSSVIAELLRYMVLAVPDTFISLDCFPLPSFVVPDVYGRGALLKITSSGGISSSKRCDAYRYLSCGYAVCSIQKRAYDLATVANPNLQARGAAKVVQALDIALVTGNLSVAYSSLFNDLSDTLMEERWIKEVSPSLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRASPSRNVKFTGRRDLSQIHMAVSILKNKMDEMNNLSRSKSSTRVTLNNITKGSSLTDACLTAAAVDDTSGLQSNAKNVDEKKDTNDIFESPGPLHDIIVCWLDQHEVSSVAGFTRVDVLIVELIRNGIFFPQAYVRQLIISGITDKNDTMLDVERKRRHHRTLKQLPGSSLFDILEETRTVEEQQLYEMMSTYSSERRLVLSELSCDHSFYASGRGEYTASSCIRKQSDLPLASGGDKHGRVPEQVEDVKALLSSLLGFTYPSPVESEPRQIKTSFQESATSTLSQVETGEAKSGCEVCMRSKGQKLDDTATPFQGFSLIQSDEEDIWWVRKGTKLQESFNIEPVQKSVKQTSRGRAKVVRKTQSLAQLAAARIEGSQGTSTSHVCESKMSCPHHKPNIDGDNVKDFDHTRVANLTEIGKSLKRLRLLERRSVSSWLLKTVRQLIEGNETTAAKATNSISILSLQSDDKTTSKWRLGDEELLSVLYLLDTCCDLVSCARFLVWLLAKIRGGMGSSGQPGRSSMHTRNRDHQVCQVSEALVFSSLLRYENILLAADILPDVLSALVNRNSVSAIVRHPGSTAFAYVRYFLKKYRDVAGVAKWEKSFRTTCDQRLLAELDNGRSIDGELISSSGVSAGEEIDEQVRQKLNGRSSRLVQNMKEIVQRQADEIQRSLKEKKVLATPRNPPTFEKEDSYQIAHDIVSGLVECIRQNGGANPDGDLSTVASAVSAIVANAGHVIAKHLDFAGGNYQGVNSVSNSLNFVRHTLRVHINSLCLLKETLGDRFSRAFEIALAVETSGAVTAAFASPKMHRNQFQPSPEAHDAYGNHTSDLSNSGKGFVGRTAKVSAAVSALVVGAVVHGAVSLERMVAALKIKDGLDILQLLRGLKSSSNGVSRPTGTFRIEHSTDVLVHWFRVLLGNCRTVYDGLIADILGDSYILALSRLQQMLPLSVIFPPAYSIFAMVLWRRYIFNREDPQLYQSLSNAISDITRHQPFREICFRNTHRLYNLLASDVGDSEFAAMLETHSPDRNSKILPFIPLRARLFLDALIDCNTPTIQGDGASEPCDPKDNELKLSERLMQLLDTLQPAKFHWQWVEMRLLLDEQALMEKVAAGKTALESLRSLSPKAEGFTLSDSEKGFTEVILSRLLARPDAAPLYSEAVRLLGKLQESLVMDVKWILQGQDAILGRRSTRQQLVHIAQRKGLSTKAQVWKPWGWSSLLSDVIPNKTAKRKLEVTSIEEGEVVDDTVDAKRPSKTPPHSVDRSFEAIRSINKYLTEKALAELVLPCIDRNGDYQ
Length1568
PositionKinase
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.203
Instability index48.01
Isoelectric point7.18
Molecular weight174200.79
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10016
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.88|      18|     143|     128|     159|       1
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  128-  145 (34.57/46.33)	DCFPLPSFVVPDVYGRGA
  179-  196 (30.31/10.65)	RAYDLATVANPNLQARGA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.50|      41|     222|     217|     260|       2
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  217-  260 (64.82/52.66)	SSLFNDLSDT.LMEERWIKEVSpSLQSSLMWIGTVELSliCSIFF
  442-  483 (67.68/43.49)	SSLFDILEETrTVEEQQLYEMM.STYSSERRLVLSELS..CDHSF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     278.06|      92|     702|     267|     369|       3
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  267-  369 (145.77/101.18)	CDYRDCRASPSRnvkftgrrDLSQIHMAVS.ILKN.......KMDEM...........NNLSRSKSSTRVTLNNI.....TKGSSLTDACLTAAAVDDTSGLqsnAKNVDEKKDTNDIFESPGPLHD
  980- 1095 (132.29/73.15)	CIRQNGGANPDG........DLSTVASAVSaIVANaghviakHLDFAggnyqgvnsvsNSLNFVRHTLRVHINSLcllkeTLGDRFSRAFEIALAVETSGAV...TAAFASPKMHRNQFQPSPEAHD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     346.61|     110|     656|     665|     777|       4
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  665-  777 (174.15/148.89)	CphHKPNIDGDNVKDFDHTRVANLTEIGKSLKRLRLLERRSVsSWLLKTVRQLIEGNETTAAKATNSISILSLQSDDKTTSKWRLGDEE......LLSVLYLLDTCCDLVS.CARFLVWL
 1324- 1440 (172.46/134.18)	C..NTPTIQGDGASEPCDPKDNELKLSERLMQLLDTLQPAKF.HWQWVEMRLLLDEQALMEKVAAGKTALESLRSLSPKAEGFTLSDSEkgftevILSRLLARPDAAPLYSeAVRLLGKL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.48|      22|      27|    1238|    1260|       5
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 1238- 1260 (36.42/29.60)	WRRYIFnREDPQLYQSLSNAISD
 1267- 1288 (40.06/27.24)	FREICF.RNTHRLYNLLASDVGD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.35|      16|      49|      60|      75|       7
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   35-   50 (18.62/ 7.78)	ELLVPSVL..IEW.LSnqL
   60-   75 (26.08/13.76)	ELLLPIMLGLVDT.IT..L
  111-  127 (22.65/11.01)	ELLRYMVLAVPDTfIS..L
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.17|      27|      28|     577|     604|       8
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  584-  612 (39.19/31.99)	ATPFQGfSLIQSDEEDIWWVRkGTKLQES
  615-  642 (36.98/24.17)	IEPVQK.SVKQTSRGRAKVVRkTQSLAQL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10016 with Med12 domain of Kingdom Viridiplantae
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