<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10011

Description Polymerase II transcription-mediator2
SequenceMKEIVQRQADEIQRSLKEKKVLATPRNPPTFEKEDSYQIAHDIVSGLVECIRQNGGANPDGDLSTVASAVSAIVANAGHVIAKHLDFAGGNYQGVNSVSNSLNFVRHTLRVHINSLCLLKETLGDRFSRAFEIALAVETSGAVTAAFASPKMHRNQFQPSPEAHDAYGNHTSDLSNSGKGFVGRTAKVSAAVSALVVGAVVHGAVSLERMVAALKIKDGLDILQLLRGLKSSSNGVSRPTGTFRIEHSTDVLVHWFRVLLGNCRTVYDGLIADILGDSYILALSRLQQMLPLSVIFPPAYSIFAMVLWRRYIFNREDPQLYQSLSNAISDITRHQPFREICFRNTHRLYNLLASDVGDSEFAAMLETHSPDRNSKILPFIPLRARLFLDALIDCNTPTIQGDGASEPCDPKDNELKLSERLMQLLDTLQPAKFHWQWVEMRLLLDEQALMEKVAAGKTALESLRSLSPKAEGFTLSDSEKGFTEVILSRLLARPDAAPLYSEAVRLLGKLQESLVMDVKWILQGQDAILGRRSTRQQLVHIAQRKGLSTKAQVWKPWGWSSLLSDVIPNKTAKRKLEVTSIEEGEVVDDTVDAKRPSKTPPHSVDRSFEAIRSINKYLTEKALAELVLPCIDRSSADIRGILSVDLIKQMGTISEHIKAIARNGAKQAGSVPSGNEVPSSKSSGRKGIRGGSPNIGRRAPVGNDPSPPSASALRAALWLRLQFIIRLLPVIMADRSMRQTLASAILGLLATRMIYEDADLPLPPTNATALRREVDSLLEPPLDVLLDRPGESLFERLLCVLHALLGSYKPSWLKSRSASRSTIRIQRDFSAFDNEAAEGLQSALDHMELPETIRRRIQAAMPLLPPSRHPSLQCQPPQLSLAALTPLQSSTSGVGPQQKSCSASWVPTNVSGRSKAALPSHDPEMEVDPWNLLEDGTSCPSTASGSHGASGVTGDHANLKACSWLKGAVRVRRTELTYIGSLDDDT
Length986
PositionKinase
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.05
Grand average of hydropathy-0.198
Instability index48.75
Isoelectric point8.72
Molecular weight107880.08
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10011
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.16|      24|      26|     662|     685|       1
---------------------------------------------------------------------------
  662-  685 (43.11/23.56)	RNGAKQAG.SVPSGNE.VPSSKSSGR
  689-  714 (36.05/18.51)	RGGSPNIGrRAPVGNDpSPPSASALR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.16|      45|     304|     174|     221|       2
---------------------------------------------------------------------------
  174-  221 (66.35/59.09)	LSNSGKGF....VGR.TAKVSAAvsALVVGAV.VHGAVSlERMVAALK.IKDGLD
  475-  526 (58.81/41.09)	LSDSEKGFteviLSRlLARPDAA..PLYSEAVrLLGKLQ.ESLVMDVKwILQGQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.73|      15|      15|     770|     784|       3
---------------------------------------------------------------------------
  770-  784 (26.22/16.01)	LRREVDSLLEPPLDV
  786-  800 (27.51/17.18)	LDRPGESLFERLLCV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.36|      26|      56|     850|     879|       5
---------------------------------------------------------------------------
  850-  879 (44.25/28.38)	PETIRRRIQAAMpllpPSRHPSLQCQPPQL
  907-  932 (49.11/22.98)	PTNVSGRSKAAL....PSHDPEMEVDPWNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.95|      21|      26|     594|     614|       6
---------------------------------------------------------------------------
  568-  587 (17.18/ 7.19)	..PNKTAKRKLEvTSIEEGEVV
  594-  614 (35.86/23.45)	KRPSKTPPHSVD.RSFEAIRSI
  621-  641 (30.91/19.14)	KALAELVLPCID.RSSADIRGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     141.72|      32|      56|     243|     274|       7
---------------------------------------------------------------------------
  243-  274 (57.10/40.19)	FRIEHSTDVLVHWFRVLLG.NCRTVYDGL...IADI
  296-  331 (49.05/33.44)	FPPAYSIFAMVLWRRYIFNrEDPQLYQSLsnaISDI
  337-  356 (35.57/22.13)	FR.E...........ICFR.NTHRLYNLL...ASDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.89|      11|     151|     811|     827|      10
---------------------------------------------------------------------------
  811-  827 (14.80/18.36)	SWLKSrsasrsTIRIQR
  963-  973 (21.09/10.12)	SWLKG......AVRVRR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10011 with Med12 domain of Kingdom Viridiplantae
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