<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10009

Description Polymerase II transcription-mediator2
SequenceMHRYSSNSAGFSGGRDGARLEASPFSSSSSGYPVSSRRQQQLVPYKLKCDKDPLNNKLGPPDFYPQTPNCPEETLTKEYAQAGYKETVEGIEEAREIVLSQIPYFCKPDAVIKCKEALKKRLRAINESRAQKRKAGQVYGVPLSGSLLIKPGVYPEQRPCNEDARRKWIEALAQPNKRLRSLSEHVPHGYRRKSLFEGLIRYNVPLLRATWFIKVTYLNQLQTRQTPNSISVAGSDNQRSNQWTKDVVEYLQHILDEFCSKEGAFVHPSFREQSSPGPTAGTNQIKMKTEASPAAGDIEEPLVHFKWRYMVRLIQWHLTEELLVPSVLIEWLSNQLQERDSVDVLELLLPIMLGLVDTITLSQTYVRMFVELLVRRLNDASVVDSPKGPSVSSVIAELLRYMVLAVPDTFISLDCFPLPSFVVPDVYGRGALLKITSSGGISSSKRCDAYRYLSCGYAVCSIQKRAYDLATVANPNLQARGAAKVVQALDIALVTGNLSVAYSSLFNDLSDTLMEERWIKEVSPSLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRASPSRNVKFTGRRDLSQIHMAVSILKNKMDEMNNLSRSKSSTRVTLNNITKGSSLTDACLTAAAVDDTSGLQSNAKNVDEKKDTNDIFESPGPLHDIIVCWLDQHEVSSVAGFTRVDVLIVELIRNGIFFPQAYVRQLIISGITDKNDTMLDVERKRRHHRTLKQLPGSSLFDILEETRTVEEQQLYEMMSTYSSERRLVLSELSCDHSFYASGRGEYTASSCIRKQSDLPLASGGDKHGRVPEQVEDVKALLSSLLGFTYPSPVESEPRQIKTSFQESATSTLSQVETGEAKSGCEVCMRSKGQKLDDTATPFQGFSLIQSDEEDIWWVRKGTKLQESFNIEPVQKSVKQTSRGRAKVVRKTQSLAQLAAARIEGSQGTSTSHVCESKMSCPHHKPNIDGDNVKDFDHTRVANLTEIGKSLKRLRLLERRSVSSWLLKTVRQLIEGNETTAAKATNSISILSLQSDDKTTSKWRLGDEELLSVLYLLDTCCDLVSCARFLVWLLAKIRGGMGSSGQPGRSSMHTRNRDHQVCQVREHTSCG
Length1101
PositionKinase
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.370
Instability index55.83
Isoelectric point8.49
Molecular weight123118.70
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10009
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.90|      17|      19|       4|      20|       1
---------------------------------------------------------------------------
    4-   20 (30.54/17.00)	YSSNSAGFS.GGRDGARL
   25-   42 (26.36/13.68)	FSSSSSGYPvSSRRQQQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.63|      19|      19|      49|      67|       2
---------------------------------------------------------------------------
   53-   73 (32.63/20.62)	PLNNK.LGPPDFYPQTpnCPEE
   74-   87 (16.21/ 6.37)	TLTKE.YAQAG.YKET......
  142-  163 (26.80/15.56)	PLSGSlLIKPGVYPEQrpCNED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.53|      25|      49|     346|     393|       3
---------------------------------------------------------------------------
  346-  370 (43.25/62.21)	ELLLPIMLGLVDT.ITLSQTYVRMFV
  397-  422 (41.28/15.41)	ELLRYMVLAVPDTfISLDCFPLPSFV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.41|      11|      19|     466|     477|       4
---------------------------------------------------------------------------
  466-  477 (14.84/16.43)	AYDLATVANpNL
  488-  498 (18.56/12.74)	ALDIALVTG.NL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.50|      41|     309|     503|     641|       5
---------------------------------------------------------------------------
  503-  546 (64.82/171.71)	SSLFNDLSDT.LMEERWIKEVSpSLQSSLMWIGTVELSliCSIFF
  728-  769 (67.68/10.34)	SSLFDILEETrTVEEQQLYEMM.STYSSERRLVLSELS..CDHSF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10009 with Med12 domain of Kingdom Viridiplantae
Unable to open file!