<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10006
Description |
Polymerase II transcription-mediator2 |
Sequence | MHRYSSNSAGFSGGRDGARLEASPFSSSSSGYPVSSRRQQQLVPYKLKCDKDPLNNKLGPPDFYPQTPNCPEETLTKEYAQAGYKETVEGIEEAREIVLSQIPYFCKPDAVIKCKEALKKRLRAINESRAQKRKAGQVYGVPLSGSLLIKPGVYPEQRPCNEDARRKWIEALAQPNKRLRSLSEHVPHGYRRKSLFEGLIRYNVPLLRATWFIKVTYLNQLQTRQTPNSISVAGSDNQRSNQWTKDVVEYLQHILDEFCSKEGAFVHPSFREQSSPGPTAGTNQIKMKTEASPAAGDIEEPLVHFKWRYMVRLIQWHLTEELLVPSVLIEWLSNQLQERDSVDVLELLLPIMLGLVDTITLSQTYVRMFVELLVRRLNDASVVDSPKGPSVSSVIAELLRYMVLAVPDTFISLDCFPLPSFVVPDVYGRGALLKITSSGGISSSKRCDAYRYLSCGYAVCSIQKRAYDLATVANPNLQARGAAKVVQALDIALVTGNLSVAYSSLFNDLSDTLMEERWIKEVSPSLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRASPSRNVKFTGRRDLSQIHMAVSILKNKMDEMNNLSRSKSSTRVTLNNITKGSSLTDACLTAAAVDDTSGLQSNAKNVDEKKDTNDIFESPGPLHDIIVCWLDQHEVSSVAGFTRVDVLIVELIRNGIFFPQAYVRQLIISGITDKNDTMLDVERKRRHHRTLKQLPGSSLFDILEETRTVEEQQLYEMMSTYSSERRLVLSELSCDHSFYASGRGEYTASSCIRKQSDLPLASGGDKHGRVPEQVEDVKALLSSLLGFTYPSPVESEPRQIKTSFQESATSTLSQVETGEAKSGCEVCMRSKGQKLDDTATPFQGFSLIQSDEEDIWWVRKGTKLQESFNIEPVQKSVKQTSRGRAKVVRKTQSLAQLAAARIEGSQGTSTSHVCESKMSCPHHKPNIDGDNVKDFDHTRVANLTEIGKSLKRLRLLERRSVSSWLLKTVRQLIEGNETTAAKATNSISILSLQSDDKTTSKWRLGDEELLSVLYLLDTCCDLVSCARFLVWLLAKIRGGMGSSGQPGRSSMHTRNRDHQVCQVSEALVFSSLLRYENILLAADILPDVLSALVNRNSVSAIVRHPGSTAFAYVRYFLKKYRDVAGVAKWEKSFRTTCDQRLLAELDNGRSIDGELISSSGVSAGEEIDEQVRQKLNGRSSRLVQNMKEIVQRQADEIQRSLKEKKVLATPRNPPTFEKEDSYQIAHDIVSGLVECIRQNGGANPDGDLSTVASAVSAIVANAGHVIAKHLDFAGGNYQGVNSVSNSLNFVRHTLRVHINSLCLLKETLGDRFSRAFEIALAVETSGAVTAAFASPKMHRNQFQPSPEAHDAYGNHTSDLSNSGKGFVGRTAKVSAAVSALVVGAVVHGAVSLERMVAALKIKDGLDILQLLRGLKSSSNGVSRPTGTFRIEHSTDVLVHWFRVLLGNCRTVYDGLIADILGDSYILALSRLQQMLPLSVIFPPAYSIFAMVLWRRYIFNREDPQLYQSLSNAISDITRHQPFREICFRNTHRLYNLLASDVGDSEFAAMLETHSPDRNSKILPFIPLRARLFLDALIDCNTPTIQGDGASEPCDPKDNELKLSERLMQLLDTLQPAKFHWQWVEMRLLLDEQALMEKVAAGKTALESLRSLSPKAEGFTLSDSEKGFTEVILSRLLARPDAAPLYSEAVRLLGKLQESLVMDVKWILQGQDAILGRRSTRQQLVHIAQRKGLSTKAQVWKPWGWSSLLSDVIPNKT |
Length | 1787 |
Position | Kinase |
Organism | Zea mays (Maize) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade>
Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.276 |
Instability index | 49.68 |
Isoelectric point | 8.58 |
Molecular weight | 199004.61 |
Publications | PubMed=19965430
|
Function
Annotated function |
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP10006
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 267.99| 91| 532| 1122| 1224| 1
---------------------------------------------------------------------------
1122- 1224 (124.90/123.34) ALVNRnsVSAivrhpGSTAFAYVRYFLKKYRDVAgVAKWEKSFRTTCDQRLLAELDNGrSIDGELISSSGvSAGEEIDEQVRQKLNG.......RSSRlvQNMKEIVQRQ
1664- 1761 (143.09/98.65) ALMEK..VAA.....GKTALESLRSLSPKAEGFT.LSDSEKGFTEVILSRLLARPDAA.PLYSEAVRLLG.KLQESLVMDVKWILQGqdailgrRSTR..QQLVHIAQRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 334.71| 113| 803| 629| 756| 4
---------------------------------------------------------------------------
629- 756 (171.59/165.86) GLQSNAKNVDEKKDTNDIFESPgplhDIIVCWLdqhevSSVAGFTRV..DVLIVELIRN...............GIFFPQAY.VRQLII..SGITDKNDTML.........DVERkrrhHRTLKQL...PGSSLFDILeeTRTVEEQQLYEMMSTYSSER
1444- 1588 (163.13/118.95) GLKSSSNGVSRPTGTFRIEHST....DVLVHWF.....RVLLGNCRTvyDGLIADILGDsyilalsrlqqmlplSVIFPPAYsIFAMVLwrRYIFNREDPQLyqslsnaisDITR....HQPFREIcfrNTHRLYNLL..ASDVGDSEFAAMLETHSPDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 56.59| 18| 23| 4| 25| 6
---------------------------------------------------------------------------
6- 25 (27.86/24.21) SNSAGFS.GGRDGARLeaSPF
27- 45 (28.74/11.24) SSSSGYPvSSRRQQQL..VPY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 84.53| 25| 49| 346| 393| 7
---------------------------------------------------------------------------
346- 370 (43.25/57.93) ELLLPIMLGLVDT.ITLSQTYVRMFV
397- 422 (41.28/13.94) ELLRYMVLAVPDTfISLDCFPLPSFV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 84.65| 28| 803| 468| 497| 9
---------------------------------------------------------------------------
468- 497 (41.88/37.89) DLATVAN..PNLQARGAAKVVQALDIAlvTGN
1278- 1307 (42.76/31.44) DLSTVASavSAIVANAGHVIAKHLDFA..GGN
---------------------------------------------------------------------------
|