<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09997
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MDIPEQRLSPVGFTTLDAFDHQIMAPAQDVVAKVQEPHNDTATPAQSHSQVLSSGRFDYLTKAEAKLTFAPEYAAVEILIAEAPTPLFTNPYFPRSKKPGSSSFSARVYSYDVAQSSQIESTGDKPDKTSKLISGNHLHDISSSNLYTLVQGGNKGSDKILKSTDTQPSKGELSPPISGVTSFNFSLVSQKKSGNMFNAGYFLLSMKTALATEIECITFQAAMCRIRHTLLSLRSKASAEFNSATSSFIQTNVSNKSDLTPRSLMDNVGVWRPVVTPKGPKSLESLSANTLTGASPSLSIQRQPVVDLLCAMTLLVQQSTSFVDMSLDMDDGDGSFFWLSLDEQKRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVSEPSMISLLQSDIRVALKAAFANMDGPLSVIDWCRGRGNAAESAGTGDAYSFQYSSGDILEPSSSLSIGGDSMSPPQPTSSNRGDLRVTAGISELEFQKGYHRVRPTIAVLPSPSMLVGYQDDWLKASVNSLKTWEKAPFEPYALPKPVTYYALCPDIDMLTSAVADFFMQLGTVYEVCKLGTHSPQNNGGQMELSPGKYLPSGLVLVDCPEQLKKVRCGHLGPISSTSDCLQAFSKHWSVKSFVTSISRILKDIKLTSNISTNQKESSSGPCTVIYVVCPFPEPCAILQTLVECSVALGYVISSPERERKLLYSQVAKALNSSASVDEASASNVVMLSGFSIPKLVLQIVTIETVLRMDKPNKELAVLKDIAFTVYNKARRIPRAVSTSDMFQSPTYLGRSQSTMMHVTSPAPTLWKECLVPRMSGPTLSRETDFDASMRSATWDNSWQPARSGGLLDPSKLPDLCAQDDRKYAFEPLFILADPGSADLNALMEPSKSGADASGSRVYGSISGSNSDSGVSPLLDVSESDSAASLHCCYGWTEDWRWLVCIWTDARGELLDSLIFPFGGISSRQDTKVLQSLFIQILQQGCQIMSSSPEASNMRPRDVIITRIGGFLELEIQEWQKAIYSYGGNEVKKWPVQLRRSIPEGIPPSSNGPTLQQQQQQDMALIQDRNMPSSPNPLYSPHPKSSFMKGALGQSGNKKQILVEQSGMDTSRGSLHLVRSISLVAVSQDHSLHLTCQADLLSRPASAGEGSQGSSGPWSYLEGFTPVKSIGSMSASHSYLLVPSPSMRYLSPATLQLPTCLTSESPPLAHLLHSKGTAIPLAMGYVVSKAVPPVRRDSAQLTKDEQPSVLSVSIIDHYGGSSGTVQEKMSRGGGGGSKQARNLSQETTGRECEMEMHSVLEAVAAELHSLSWLTVSPVYTERRTALPFHCDMVLRMRRLLHYADKYLSEPKGETTH |
Length | 1347 |
Position | Kinase |
Organism | Zea mays (Maize) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade>
Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.223 |
Instability index | 55.52 |
Isoelectric point | 6.17 |
Molecular weight | 146007.04 |
Publications | PubMed=19965430
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP09997
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 549.92| 171| 489| 225| 473| 1
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237- 416 (275.11/230.03) ASAEFNsatSSFIQTNVSNKSDLTPRSLMDNVGVWRPvVTPKGPKSLESLSANTLTGASPSLSIQRQPVVDLLCA..MTLLVQQSTSF..VDMSLDMDDGDGSFFWLSLDEQKRRGF...SCDPSMVHAGCGGLLGTCHSKDCagvdlVDPLSAEVSEPSM...ISLLQSDIRVALKAAFANMD...GPLSVI
478- 661 (274.80/184.72) SELEFQ...KGYHRVRPTIAVLPSPSMLVGYQDDWLK.ASVNSLKTWEKAPFEPYALPKPVTYYALCPDIDMLTSavADFFMQLGTVYevCKLGTHSPQNNGGQMELSPGKYLPSGLvlvDCPEQLKKVRCGHLGPISSTSDC.....LQAFSKHWSVKSFvtsISRILKDIKLTSNISTNQKEsssGPCTVI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 55.42| 16| 1090| 44| 60| 2
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44- 60 (27.25/17.85) PAQS..HSQvLSSGRFDYL
1135- 1152 (28.17/13.98) PASAgeGSQ.GSSGPWSYL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 137.17| 39| 384| 773| 813| 3
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773- 813 (65.80/39.08) STSDMFQSPTYLgRSQSTMMHVTSPAPTLWKECLVPRmSGP
1160- 1198 (71.37/34.58) SIGSMSASHSYL.LVPSPSMRYLSPATLQLPTCLTSE.SPP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 57.64| 20| 41| 125| 150| 4
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125- 150 (25.09/25.66) KPDK..TSKLISGnhlhdISSSNlYTLV
167- 188 (32.55/15.43) QPSKgeLSPPISG.....VTSFN.FSLV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 80.38| 23| 1027| 3| 29| 5
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3- 29 (37.29/38.46) IPEQRLSPvgftTLDAFDHQIMAPAQD
1037- 1059 (43.09/31.35) IPPSSNGP....TLQQQQQQDMALIQD
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