<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09988
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MWTNIFKIGELQTVSWFQFLPIEPDASAASEKSSKVEQKDALNSIVLSAYLHLQSEGFLSTWTNSFVGPWDPSQGEHNPDEKIKLWLFLPGCHSSVSEIAQPAVNKLRVASNGLWVAPGNSEEVAAALSQALRNSLERSLKGLSYARFGDVFTKYNPPTRNQNSFRRAQPTVEFVFAATEEAIFVHVVISARYVRNLCSDDIEKVLAHSPPSIGEGLPVVVAPSGMLGRLVGCCPSDLVRQVYSSKSLTPNLPGFSQPTVCQLRGQSYYVEVALGFPAASAKKVSEFEHIHIKKELDPVKDAMVGSDGQRKVESPDGLPILERTFIYPPEAVLVPMVHQAFVRFSSKRMCLQGSLGSSSWEAWPFWNFAPSSYFQNSSFLGSSCGLGVNSNYLRLRRKKNKCNSMASSVSSVSSTSDGSQRAVATEGDIVADADSMSCRQSDMPSNNDTLGSKMVSKRPRSELTEVSSHTGKDVCENIQDPNGQVGHSWGWDDEGVVMDINILLSEFGDFSDFFQQEELDFGEPPGTAESHALVIPASDCGDVTFTDSPSTAMDIPEQRLSPVGFTTLDAFDHQIMAPAQDVVAKVQEPHNDTATPAQSHSQVLSSGRFDYLTKAEAKLTFAPEYAAVEILIAEAPTPLFTNPYFPRSKKPGSSSFSARVYSYDVAQSSQIESTGDKPDKTSKLISGNHLHDISSSNLYTLVQGGNKGSDKILKSTDTQPSKGELSPPISGVTSFNFSLVSQKKSGNMFNAGYFLLSMKTALATEIECITFQAAMCRIRHTLLSLRSKASAEFNSATSSFIQTNVSNKSDLTPRSLMDNVGVWRPVVTPKGPKSLESLSANTLTGASPSLSIQRQPVVDLLCAMTLLVQQSTSFVDMSLDMDDGDGSFFWLSLDEQKRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVSEPSMISLLQSDIRVALKAAFANMDGPLSVIDWCRGRGNAAESAGTGDAYSFQYSSGDILEPSSSLSIGGDSMSPPQPTSSNRGISELEFQKGYHRVRPTIAVLPSPSMLVGYQDDWLKASVNSLKTWEKAPFEPYALPKPVTYYALCPDIDMLTSAVADFFMQLGTVYEVCKLGTHSPQNNGGQMELSPGKYLPSGLVLVDCPEQLKKVRCGHLGPISSTSDCLQAFSKHWSVKSFVTSISRILKDIKLTSNISTNQKESSSGPCTVIYVVCPFPEPCAILQTLVECSVALGYVISSPERERKLLYSQVAKALNSSASVDEASASNVVMLSGFSIPKLVLQIVTIETVLRMDKPNKELAVLKDIAFTVYNKARRIPRAVSTSDMFQSPTYLGRSQSTMMHVTSPAPTLWKECLVPRMSGPTLSRETDFDASMRSATWDNSWQPARSGGLLDPSKLPDLCAQDDRKYAFEPLFILADPGSADLNALMEPSKSGADASGSRVYGSISGSNSDSGVSPLLDVSESDSAASLHCCYGWTEDWRWLVCIWTDARGELLDSLIFPFGGISSRQDTKVLQSLFIQILQQGCQIMSSSPEASNMRPRDVIITRIGGFLELEIQGTHLFLSGTEIPSVSRLTR |
Length | 1572 |
Position | Kinase |
Organism | Zea mays (Maize) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade>
Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.188 |
Instability index | 51.97 |
Isoelectric point | 5.43 |
Molecular weight | 170768.13 |
Publications | PubMed=19965430
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP09988
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 141.94| 33| 107| 1379| 1411| 1
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1379- 1411 (63.60/33.77) WQPARSG.....GLLDPSKLP..DLCAQDDRKYAFEPLFI
1413- 1442 (30.60/12.48) ...ADPGsadlnALMEPSK.S..GADASGSRVYG....SI
1483- 1515 (47.75/23.54) WTDAR.G.....ELLDSLIFPfgGISSRQDTK.VLQSLFI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 188.93| 56| 107| 900| 958| 2
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900- 958 (93.57/62.04) GFSCDPSMVHAGCGGLLGTCHSKdcaGVDLVDPLSAEVSEPSMISLLQSD........IRVALKAAF
1007- 1070 (95.36/55.35) GDSMSPPQPTSSNRGISELEFQK...GYHRVRPTIAVLPSPSMLVGYQDDwlkasvnsLKTWEKAPF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 173.00| 59| 593| 499| 571| 7
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499- 571 (89.33/79.23) DINILLSEFGDFsdFFQQE......ELdfgeppGTaesHAlviPASDCGDVTFTDS...PS..TAMDIPEQ.......RLSPVGFTT..LDAF
1087- 1165 (83.67/45.19) DIDMLTSAVADF..FMQLGtvyevcKL......GT...HS...PQNNGGQMELSPGkylPSglVLVDCPEQlkkvrcgHLGPISSTSdcLQAF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 68.89| 22| 26| 85| 107| 8
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85- 107 (35.91/22.06) LWLfLPGCHSSV.SEIAQPAVNKL
114- 136 (32.98/15.57) LWV.APGNSEEVaAALSQALRNSL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 80.67| 27| 109| 716| 744| 9
---------------------------------------------------------------------------
674- 706 (37.32/22.91) TGDKPDK..TSKLISGnhlhdISSSNlYTLVQGGN
716- 744 (43.35/35.46) TDTQPSKgeLSPPISG.....VTSFN.FSLVSQKK
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 33.59| 11| 29| 755| 765| 10
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755- 765 (17.11/12.46) LLSMKTALATE
782- 792 (16.47/11.64) LLSLRSKASAE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 92.12| 30| 34| 187| 218| 12
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187- 218 (44.45/44.33) VVIS.....ARYVrNLCSDDIEKVLaHSPPSIGEGLP
219- 253 (47.67/35.75) VVVApsgmlGRLV.GCCPSDLVRQV.YSSKSLTPNLP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 61.46| 19| 390| 403| 421| 14
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403- 421 (32.66/21.02) NSMASSV..SSVSSTSDGSQR
794- 814 (28.81/17.47) NSATSSFiqTNVSNKSDLTPR
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