<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09986
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MWTNIFKIGELQTVSWFQFLPIEPDASAASEKSSKVEQKDALNSIVLSAYLHLQSEGFLSTWTNSFVGPWDPSQGEHNPDEKIKLWLFLPGCHSSVSEIAQPAVNKLRVASNGLWVAPGNSEEVAAALSQALRNSLERSLKGLSYARFGDVFTKYNPPTRNQNSFRRAQPTVEFVFAATEEAIFVHVVISARYVRNLCSDDIEKVLAHSPPSIGEGLPVVVAPSGMLGRLVGCCPSDLVRQVYSSKSLTPNLPGFSQPTVCQLRGQSYYVEVALGFPAASAKKVSEFEHIHIKKELDPVKDAMVGSDGQRKVESPDGLPILERTFIYPPEAVLVPMVHQAFVRFSSKRMCLQGSLGSSSWEAWPFWNFAPSSYFQNSSFLGSSCGLGVNSNYLRLRRKKNKCNSMASSVSSVSSTSDGSQRAVATEGDIVADADSMSCRQSDMPSNNDTLGSKMVSKRPRSELTEVSSHTGKDVCENIQDPNGQVGHSWGWDDEGVVMDINILLSEFGDFSDFFQQEELDFGEPPGTAESHALVIPASDCGDVTFTDSPSTAMDIPEQRLSPVGFTTLDAFDHQIMAPAQDVVAKVQEPHNDTATPAQSHSQVLSSGRFDYLTKAEAKLTFAPEYAAVEILIAEAPTPLFTNPYFPRSKKPGSSSFSARVYSYDVAQSSQIESTGDKPDKTSKLISGNHLHDISSSNLYTLVQGGNKGSDKILKSTDTQPSKGELSPPISGVTSFNFSLVSQKKSGNMFNAGYFLLSMKTALATEIECITFQAAMCRIRHTLLSLRSKASAEFNSATSSFIQTNVSNKSDLTPRSLMDNVGVWRPVVTPKGPKSLESLSANTLTGASPSLSIQRQPVVDLLCAMTLLVQQSTSFVDMSLDMDDGDGSFFWLSLDEQKRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVSEPSMISLLQSDIRVALKAAFANMDGPLSVIDWCRGRGNAAESAGTGDAYSFQYSSGDILEPSSSLSIGGDSMSPPQPTSSNRGDLRVTAGISELEFQKGYHRVRPTIAVLPSPSMLVGYQDDWLKASVNSLKTWEKAPFEPYALPKPVTYYALCPDIDMLTSAVADFFMQLGTVYEVCKLGTHSPQNNGGQMELSPGKYLPSGLVLVDCPEQLKKVRCGHLGPISSTSDCLQAFSKHWSVKSFVTSISRILKDIKLTSNISTNQKESSSGPCTVIYVVCPFPEPCAILQTLVECSVALGYVISSPERERKLLYSQVAKALNSSASVDEASASNVVMLSGFSIPKLVLQIVTIETVLRMDKPNKELAVLKDIAFTVYNKARRIPRAVSTSDMFQSPTYLGRSQSTMMHVTSPAPTLWKECLVPRMSGPTLSRETDFDASMRSATWDNSWQPARSGGLLDPSKLPDLCAQDDRKYAFEPLFILADPGSADLNALMEPSKSGADASGSRVYGSISGSNSDSGVSPLLDVSESDSAASLHCCYGWTEDWRWLVCIWTDARGELLDSLIFPFGGISSRQDTKVLQSLFIQILQQGCQIMSSSPEASNMRPRDVIITRIGGFLELEIQEWQKAIYSYGGNEVKKWPVQLRRSIPEGIPPSSNGPTLQQQQQQDMALIQDRNMPSSPNPLYSPHPKSSFMKGALGQSGNKKQILVEQSGMDTSRGSLHLVRSISLVAVSQDHSLHLTCQADLLSRPASAGEGSQGSSGPWSYLEGFTPVKSIGSMSASHSYLLVPSPSMRYLSPATLQLPTCLTSESPPLAHLLHSKGTAIPLAMGYVVSKAVPPVRRDSAQLTKDEQPSVLSVSIIDHYGGSSGTVQEKMSRGGGGGSKQARNLSQETTGRECEMEMHSVLEAVAAELHSLSWLTVSPVYTERRTALPFHCDMVLRMRRLLHYADKYLSEPKGETTH |
Length | 1899 |
Position | Kinase |
Organism | Zea mays (Maize) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade>
Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.233 |
Instability index | 55.57 |
Isoelectric point | 5.82 |
Molecular weight | 206266.96 |
Publications | PubMed=19965430
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP09986
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 141.94| 33| 108| 1386| 1418| 1
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1386- 1418 (63.60/35.04) WQPARSG.....GLLDPSKLP..DLCAQDDRKYAFEPLFI
1420- 1449 (30.60/12.91) ...ADPGsadlnALMEPSK.S..GADASGSRVYG....SI
1490- 1522 (47.75/24.41) WTDAR.G.....ELLDSLIFPfgGISSRQDTK.VLQSLFI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 72.13| 20| 108| 926| 949| 2
---------------------------------------------------------------------------
930- 949 (34.55/22.74) VDPLSAEVSEPSMISLLQSD
1041- 1060 (37.58/15.72) VRPTIAVLPSPSMLVGYQDD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
5| 185.92| 75| 311| 210| 295| 6
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101- 130 (29.01/ 8.70) QPAVNKLRVASNGLWVAPGNSEEVAAALSQ.........................................................................................................................................................................................................................................................................................................
210- 256 (57.07/39.13) ............................................................................................................................................................................................alrnslerslkglsyarfgdvftkynpptrnqnsfrraqptvefvfaateeaifvhvvisaryvrnlcsddiekvlahsPPSIGEGLPVVVaPSGMLGRL.........VGcCPSDL..VR..QVYSSKSLTPNLPGFS
257- 286 (30.49/24.57) QPTVCQLRGQSYYVEVALGFPAASAKKVSE.........................................................................................................................................................................................................................................................................................................
524- 571 (41.63/18.34) ..............................fehihikkeldpvkdamvgsdgqrkvespdglpilertfiyppeavlvpmvhqafvrfsskrmclqgslgsssweawpfwnfapssyfqnssflgsscglgvnsnylrlrrkknkcnsmassvssvsstsdgsqravategdivadadsmscrqsdmpsnndtlgskmvskrprseltevsshtgkdvceniqdpngqvghswgwddegvvmdinillsefgdfsdffqqeeldfgePPGTAESHALVI.PASDCGDVtftdspstaMD.IPEQ.......RLSPVGFTT..LDAF.
1139- 1173 (27.73/ 8.07) ........................................................................................................................................................................................................................................................................................PSGLV..L.........VD.CPEQLkkVRcgHLGPISSTSDCLQAFS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 66.49| 22| 310| 666| 690| 7
---------------------------------------------------------------------------
666- 687 (37.84/24.90) AQSSQ......IESTGDKPDK..TSKLISG
702- 731 (28.65/ 9.64) VQGGNkgsdkiLKSTDTQPSKgeLSPPISG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 52.45| 15| 592| 499| 515| 12
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499- 515 (24.05/21.80) DINILLSEFGDFsdFFQ
1094- 1108 (28.40/18.05) DIDMLTSAVADF..FMQ
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|