<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09985
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MDIPEQRLSPVGFTTLDAFDHQIMAPAQDVVAKVQEPHNDTATPAQSHSQVLSSGRFDYLTKAEAKLTFAPEYAAVEILIAEAPTPLFTNPYFPRSKKPGSSSFSARVYSYDVAQSSQIESTGDKPDKTSKLISGNHLHDISSSNLYTLVQGGNKGSDKILKSTDTQPSKGELSPPISGVTSFNFSLVSQKKSGNMFNAGYFLLSMKTALATEIECITFQAAMCRIRHTLLSLRSKASAEFNSATSSFIQTNVSNKSDLTPRSLMDNVGVWRPVVTPKGPKSLESLSANTLTGASPSLSIQRQPVVDLLCAMTLLVQQSTSFVDMSLDMDDGDGSFFWLSLDEQKRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVSEPSMISLLQSDIRVALKAAFANMDGPLSVIDWCRGRGNAAESAGTGDAYSFQYSSGDILEPSSSLSIGGDSMSPPQPTSSNRGISELEFQKGYHRVRPTIAVLPSPSMLVGYQDDWLKASVNSLKTWEKAPFEPYALPKPVTYYALCPDIDMLTSAVADFFMQLGTVYEVCKLGTHSPQNNGGQMELSPGKYLPSGLVLVDCPEQLKKVRCGHLGPISSTSDCLQAFSKHWSVKSFVTSISRILKDIKLTSNISTNQKESSSGPCTVIYVVCPFPEPCAILQTLVECSVALGYVISSPERERKLLYSQVAKALNSSASVDEASASNVVMLSGFSIPKLVLQIVTIETVLRMDKPNKELAVLKDIAFTVYNKARRIPRAVSTSDMFQSPTYLGRSQSTMMHVTSPAPTLWKECLVPRMSGPTLSRETDFDASMRSATWDNSWQPARSGGLLDPSKLPDLCAQDDRKYAFEPLFILADPGSADLNALMEPSKSGADASGSRVYGSISGSNSDSGVSPLLDVSESDSAASLHCCYGWTEDWRWLVCIWTDARGELLDSLIFPFGGISSRQDTKVLQSLFIQILQQGCQIMSSSPEASNMRPRDVIITRIGGFLELEIQEWQKAIYSYGGNEVKKWPVQLRRSIPEGIPPSSNGPTLQQQQQQDMALIQDRNMPSSPNPLYSPHPKSSFMKGALGQSGNKKQILVEQSGMDTSRGSLHLVRSISLVAVSQDHSLHLTCQADLLSRPASAGEGSQGSSGPWSYLEGFTPVKSIGSMSASHSYLLVPSPSMRYLSPATLQLPTCLTSESPPLAHLLHSKGTAIPLAMGYVVSKAVPPVRRDSAQLTKDEQPSVLSVSIIDHYGGSSGTVQEKMSRGGGGGSKQARNLSQETTGRECEMEMHSVLEAVAAELHSLSWLTVSPVYTERRTALPFHCDMVLRMRRLLHYADKYLSEPKGETTH |
Length | 1340 |
Position | Kinase |
Organism | Zea mays (Maize) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade>
Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.225 |
Instability index | 55.68 |
Isoelectric point | 6.17 |
Molecular weight | 145294.25 |
Publications | PubMed=19965430
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP09985
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 108.38| 34| 385| 409| 448| 1
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409- 448 (54.20/41.68) MDGP.LS.VIDWcrgrgNAAESAGTGDAySFQYS.SGDILEPS
803- 839 (54.18/26.50) MSGPtLSrETDF.....DASMRSATWDN.SWQPArSGGLLDPS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 118.46| 33| 385| 766| 799| 2
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766- 799 (58.46/30.65) STSDMFQSPTYLgRSQSTMMHVTSPAPTLWKECL
1153- 1185 (60.00/27.74) SIGSMSASHSYL.LVPSPSMRYLSPATLQLPTCL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 120.78| 27| 41| 125| 156| 3
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125- 154 (41.95/30.79) KPDK..TSKLISGnhlHDISSSNLYTLVQGGN
167- 192 (35.83/17.12) QPSKgeLSPPISG.....VTSFN.FSLVSQKK
1056- 1081 (42.99/25.37) .PSS..PNPLYSP...HPKSSFMKGALGQSGN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 226.77| 74| 459| 210| 302| 5
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225- 302 (117.22/94.02) RIRHTLLSLRSKA...SAEFNSATSSfiqtNVSNKSDLT.PRSLMDNVGVWRPVVTPKGPKSLESLSANTLTGASPSLSIQR
686- 763 (109.55/56.17) RERKLLYSQVAKAlnsSASVDEASAS....NVVMLSGFSiPKLVLQIVTIETVLRMDKPNKELAVLKDIAFTVYNKARRIPR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 61.24| 18| 924| 335| 352| 6
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335- 352 (35.66/19.23) SFFWLSLDE..QKRR...GFSCD
1293- 1315 (25.58/11.88) SLSWLTVSPvyTERRtalPFHCD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 43.59| 13| 489| 377| 389| 10
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377- 389 (23.82/13.24) LVDPLSAEVS...EPS
860- 875 (19.77/ 9.63) LADPGSADLNalmEPS
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