<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09976

Description U-box domain-containing protein 35
SequenceMKVEEAGGGEIGEMEPPAVSTVAVAVSGGRSSRHALKWALDKFVPEGRVLFRILHVRPAITMVPTPSEKLKGSKTATKISECIPSFCTAYVISKGKLSFVRSATSDIVETPRSISSSTISSPSTRSLSSCAPSVIELNMMSSMLVVLKVSVLMILPITEWGDIYATTNVPLHQPSLPLQRDQALAIINKLSNRRVSSSSSVVSEISYNDEPALTRSHSMISEMQFSSGSSGNSVYKSFQRDNLPNNSDEASVSEISENVNHLSGQDDLRLEIERLRVKLQHLHKLHEGALHESLDTTQKLHKSGARHIEDEIKVKEIQLAEDTVRRLVRKQEMEEREAATEAEFYQRSDEMEAKQSYDGAQEAGENEMGKKIAGRGFGEYNRYTWEEIQASTSSFSSALMIGKGSYGTVYRAKLRHTVAAVKVLNSPEGCGTQQLQQELEVLGKIRHPHLLMMLGACPEHGCLVYEYMENGSLDDMLQRRKQNSSPLAWFDRFRVAWEVAAALMFLHSSKPEPIIHRDLKPANILLDGNLVSKIGDVGLSTLLPVPGTGGGGQDVPSTMVKDTAPVGTFCYIDPEYQRTGVLSMKSDVYALGIVLLQLLTARPPVGLAHAVETALEEGRFADVLDAAAGQWPLGEAQELAVLALRCSEMRRKDRPDLNGRVLPALERLKDVAAKAREGAFQGHAAAPPSHFICPILQEVMVDPYVASDGYTYDGKAIELWLSTNETSPMTNLRLPNKSLIPNHSLRSAIMDWRSRSK
Length757
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.280
Instability index52.86
Isoelectric point6.27
Molecular weight83212.92
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09976
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.03|      27|      32|     196|     222|       1
---------------------------------------------------------------------------
  196-  222 (45.57/32.95)	SSSSSVVSEISYNDEPALT..RSHSMISE
  229-  257 (41.46/29.27)	SSGNSVYKSFQRDNLPNNSdeASVSEISE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.54|      32|      38|     332|     369|       2
---------------------------------------------------------------------------
  338-  369 (54.99/39.25)	AATEAEFYQRS..DEMEAK.QSYDGAQEAGENEMG
  373-  407 (46.55/21.49)	AGRGFGEYNRYtwEEIQAStSSFSSALMIGKGSYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.01|      14|      17|     275|     291|       3
---------------------------------------------------------------------------
  275-  291 (16.89/18.96)	LRVkLQHLHKlhEGALH
  294-  307 (26.13/14.56)	LDT.TQKLHK..SGARH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.18|      30|     449|      36|      81|       5
---------------------------------------------------------------------------
   47-   76 (50.56/49.71)	GRVLFRILHVRPAITMVPTPSEKLKGSKTA
  592-  621 (48.62/17.32)	GIVLLQLLTARPPVGLAHAVETALEEGRFA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09976 with Med32 domain of Kingdom Viridiplantae
Unable to open file!