<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09971

Description Pre-mRNA-processing protein 40A
SequenceMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEESKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELGKQYQEDKIQIKEVVKSGKIPMTTSWTLEEFQTATLEDDALKGISTINIKLVYDDQLERLKEKEQKDAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGAKDKKRDKDKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
Length591
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-1.498
Instability index49.67
Isoelectric point6.55
Molecular weight70826.90
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09971
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     554.05|      66|      66|      70|     135|       1
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   14-   67 (51.29/20.01)	.................EKTS....E...EE.PVV.......YATKmeAKNAFKSLLE....SVNVESDWTWD.....QTMRVIINDKRYGAL...KT
   70-  135 (103.04/48.07)	ERKQAFNE...YLNQ.RKKFE....A...EE.KRI.......KQRK..ARDDFLAMLEE...SKELTSSTRWS.....KAILMFEDDERFKAV...ER
  138-  203 (79.42/35.26)	EREDLFEN...YLVE.LHKKEkakaA...EEhKR..............YVAEYRAFLES...CDFIKASTQWR.....KVQERLEDDERYSRL...EK
  205-  283 (78.29/34.65)	DRLDIFQE...YIRH.LEKEE....E...EQ.KRVqkdqvrrQERK..NRDGFRKMLEEhvaDGTLNARTRWR.....DYCAQIKDSQSYLAVasnTS
  286-  344 (54.67/21.84)	TPKELFDD...VIEElGKQYQ.........E.DKI.......QIKE..........VVK...SGKIPMTTSWTleefqTATL..EDDA.LKGI...ST
  346-  410 (80.32/35.75)	NIKLVYDD...QLER.LKEKE....Q...KD.AKK.......RQRL..G.ENFSDLLYS...IKEISASSTWD.....DSKQLFEDSQEFRAL...DS
  413-  456 (38.68/13.16)	YARELFEEcvvHLKE.RLKEK....ErlrEE.EKA.......KREK..EREE....KEK...KKE................................K
  457-  511 (68.33/29.25)	ERKEKERK...EKER.DHREE....R...EK.EKG.......KDRS..RRDE...MEFD...GADL..NTHGA.....K......DKKRDKDK...EK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.50|      23|      24|     529|     551|       2
---------------------------------------------------------------------------
  529-  551 (41.98/21.00)	DKDDAKKSRRHSSDRKKSRKH.AH
  554-  577 (38.53/18.64)	DSDSENRHKRHKKDRDSSRRNgAH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09971 with Med35 domain of Kingdom Viridiplantae
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