Description | Pre-mRNA-processing protein 40A |
Sequence | MASNMQSSGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVMPSQHPPQFMPPAAQQFRPVGEPMAGANVGMPGQMPHFPQPGQHLPHSNQVPPVSQGVPMVYQPARPMSSAPMQQQQQTAYAGGHLPTMGAPMQPLTYTYQPTSIPPVAQPWSTGPGQSVHHVPPLVPSGHQPVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEESKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELGKQYQEDKIQIKEVVKSGKIPMTTSWTLEEFQTATLEDDALKGISTINIKLVYDDQLERLKEKEQKDAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEK |
Length | 840 |
Position | Unknown |
Organism | Zea mays (Maize) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.867 |
Instability index | 53.89 |
Isoelectric point | 5.61 |
Molecular weight | 94994.20 |
Publications |
Annotated function |
|
GO - Cellular Component | |
GO - Biological Function | |
GO - Biological Process | mRNA cis splicing, via spliceosome GO:0045292 IEA:InterPro |
Binary Interactions |
Repeats | >MDP09970 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 421.54| 66| 66| 470| 535| 1 --------------------------------------------------------------------------- 429- 493 (78.81/45.47) ..EAKNAFKSLL.E...SVNVESDWTWDQTMRVIINDKRYGAL...KTlgER....KQAFNEYLNQRKKFEAEEKRI.......K 494- 561 (95.55/56.59) QRKARDDFLAMLEE...SKELTSSTRWSKAILMFEDDERFKAV...ERprER....EDLFENYLVELHKKEKAKAAE.......E 562- 635 (85.05/49.62) HKRYVAEYRAFLES...CDFIKASTQWRKVQERLEDDERYSRL...EK.fDR....LDIFQEYIRHLEKEEEEQKRVqkdqvrrQ 636- 706 (73.53/41.97) ERKNRDGFRKMLEEhvaDGTLNARTRWRDYCAQIKDSQSYLAVasnTS....gstpKELFDDVIEELGKQYQEDK.......... 770- 836 (88.60/51.97) QRLG.ENFSDLLYS...IKEISASSTWDDSKQLFEDSQEFRAL...DSetYA....RELFEECVVHLKERLKEKERL.......R --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 6| 271.72| 39| 39| 181| 219| 2 --------------------------------------------------------------------------- 47- 74 (37.45/13.06) QFMPPAAQQ...FRPV....................gEPMAG......ANVGMPGQM 75- 124 (49.69/19.50) PHFPQPGQHLPHSNQVP......PVSQgvpmvyqpA.RPMSSapmQQQQQTAYAGGH 137- 158 (32.31/10.35) YTY.....QPTSIPPV....................aQP.......W...STGPGQS 159- 202 (54.07/21.81) VHHVPPLVPSG.HQPVSapttlpPVNL........S.EPSSS...DWQEHTAAEGKK 203- 243 (56.17/22.92) YYYNKKTRQSSWEKPVE...lmtPLER........A.D.AST...EWKEFTTPEGRK 244- 281 (42.04/15.47) YYFNKVTKQSKWTIPDE...lkvAREL........A.ENASN.....QQPDRESG.. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 67.17| 24| 26| 310| 333| 3 --------------------------------------------------------------------------- 324- 352 (33.15/19.67) SGPPLPHNVEntsssIVGMQNGGSSTAVV 356- 379 (34.02/20.38) ASTEVPLVAT.....DAGSSRNNDENSSL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 42.14| 14| 27| 386| 399| 4 --------------------------------------------------------------------------- 386- 399 (23.22/17.32) EDGTSAED.LVEAKK 413- 427 (18.92/12.54) EEKTSEEEpVVYATK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 54.38| 13| 19| 13| 25| 5 --------------------------------------------------------------------------- 13- 25 (28.95/12.64) PPRP....PMMGSSAQP 30- 46 (25.43/10.32) PPMPmqfrPVMPSQHPP --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) GKKYYY 2) GRKYYFN 3) LLYSIKEI | 200 241 779 | 205 247 786 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab